Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001870 Daucus carota HOM05D002474 ORTHO05D007142 8.8e-54 213.4 109 100.0
Glyma.07G271300 Glycine max HOM05D002474 ORTHO05D007142 4.5e-34 147.9 100 67.0
MSTRG.16457 Avicennia marina HOM05D002474 ORTHO05D007142 5.9e-34 147.5 103 67.0
CSS0044346 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D007142 1.3e-33 146.4 103 67.0
Hma1.2p1_0157F.1_g069230 Hydrangea macrophylla HOM05D002474 ORTHO05D007142 1.3e-33 146.4 100 69.0
Lj5A306G48 Lonicera japonica HOM05D002474 ORTHO05D007142 2.9e-33 145.2 102 70.6
vmacro01627 Vaccinium macrocarpon HOM05D002474 ORTHO05D007142 2.9e-33 145.2 102 70.6
Lj4g0011201 Lotus japonicus HOM05D002474 ORTHO05D007142 3.8e-33 144.8 100 69.0
PGSC0003DMG400014407 Solanum tuberosum HOM05D002474 ORTHO05D007142 5.0e-33 144.4 109 66.1
Rhsim11G0114900 Rhododendron simsii HOM05D002474 ORTHO05D007142 6.5e-33 144.1 99 72.7
Atru.chr6.88 Acer truncatum HOM05D002474 ORTHO05D007142 8.5e-33 143.7 100 66.0
Solyc10g005910.2 Solanum lycopersicum HOM05D002474 ORTHO05D007142 1.1e-32 143.3 109 65.1
Sopen10g001870 Solanum pennellii HOM05D002474 ORTHO05D007142 1.1e-32 143.3 109 65.1
CAN.G492.43 Capsicum annuum HOM05D002474 ORTHO05D007142 1.5e-32 142.9 109 65.1
Ah.08g218030 Amaranthus hybridus HOM05D000912 ORTHO05D001232 1.9e-32 142.5 97 66.0
Lalb_Chr18g0047541 Lupinus albus HOM05D002474 ORTHO05D007142 2.5e-32 142.1 105 61.9
Nn6g34097 Nelumbo nucifera HOM05D002474 ORTHO05D007142 2.5e-32 142.1 98 68.4
Sed0015094 Sechium edule HOM05D002474 ORTHO05D007142 2.5e-32 142.1 107 61.7
EL10Ac7g18100 Beta vulgaris HOM05D002474 ORTHO05D007142 3.2e-32 141.7 100 62.0
Peaxi162Scf00071g00020 Petunia axillaris HOM05D002474 ORTHO05D007142 3.2e-32 141.7 109 62.4
Nitab4.5_0000935g0010 Nicotiana tabacum HOM05D002474 ORTHO05D007142 4.2e-32 141.4 103 67.0
ECA246G2471 Erigeron canadensis HOM05D002474 ORTHO05D007142 5.5e-32 141.0 101 67.3
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 5.5e-32 141.0 100 68.0
Cpa.g.sc2.182 Carica papaya HOM05D002474 ORTHO05D007142 7.2e-32 140.6 100 66.0
FAN11G0845 Fragaria x ananassa HOM05D002474 ORTHO05D007142 7.2e-32 140.6 97 69.1
MD04G1042800 Malus domestica HOM05D002474 ORTHO05D007142 7.2e-32 140.6 103 63.1
RcHm_v2.0_Chr5g0034601 Rosa chinensis HOM05D002474 ORTHO05D007142 7.2e-32 140.6 101 63.4
ClCG10G007610 Citrullus lanatus HOM05D002474 ORTHO05D007142 9.4e-32 140.2 105 61.9
TPR.G5978 Trifolium pratense HOM05D002474 ORTHO05D007142 9.4e-32 140.2 97 69.1
FAN21G2400 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.6e-31 139.4 97 68.0
Ca_13520_v3 Cicer arietinum L. HOM05D002474 ORTHO05D007142 2.1e-31 139.0 97 68.0
GSVIVG01018503001 Vitis vinifera HOM05D002474 ORTHO05D007142 2.1e-31 139.0 103 66.0
AUR62025683 Chenopodium quinoa HOM05D002474 ORTHO05D007142 2.7e-31 138.7 100 63.0
GSVIVG01023124001 Vitis vinifera HOM05D002474 ORTHO05D007142 2.7e-31 138.7 108 63.0
Manes.06G014900 Manihot esculenta HOM05D002474 ORTHO05D007142 3.6e-31 138.3 100 65.0
Psat0s2555g0320 Pisum sativum HOM05D002474 ORTHO05D007142 4.7e-31 137.9 97 68.0
AUR62001301 Chenopodium quinoa HOM05D002474 ORTHO05D007142 8.0e-31 137.1 98 65.3
Oeu000165.2 Olea europaea HOM05D002474 ORTHO05D007142 1.0e-30 136.7 98 69.4
Gohir.D11G328800 Gossypium hirsutum HOM05D002474 ORTHO05D007142 1.4e-30 136.3 100 65.0
Gorai.007G360100 Gossypium raimondii HOM05D002474 ORTHO05D007142 1.4e-30 136.3 100 65.0
MELO3C016437.2 Cucumis melo HOM05D002474 ORTHO05D007142 1.8e-30 136.0 101 63.4
Migut.B00704 Erythranthe guttata HOM05D002474 ORTHO05D007142 1.8e-30 136.0 99 66.7
HanXRQChr12g0367101 Helianthus annuus HOM05D002474 ORTHO05D007142 1.8e-30 136.0 97 69.1
Potri.004G230600 Populus trichocarpa HOM05D002474 ORTHO05D007142 1.8e-30 136.0 97 67.0
Sc10g0008100 Simmondsia chinensis HOM05D002474 ORTHO05D007142 1.8e-30 136.0 96 66.7
Cfa004418 Carpinus fangiana HOM05D000259 ORTHO05D000155 2.3e-30 135.6 97 64.9
Phvul.003G090600 Phaseolus vulgaris HOM05D002474 ORTHO05D007142 2.3e-30 135.6 101 64.4
SalBow4G0251 Salvia bowleyana HOM05D002474 ORTHO05D007142 2.3e-30 135.6 99 65.7
TWI14G0213 Tripterygium wilfordii HOM05D002474 ORTHO05D007142 2.3e-30 135.6 97 71.1
Actinidia11725 Actinidia chinensis HOM05D002474 ORTHO05D007142 3.0e-30 135.2 100 65.0
Aqoxy6G02786 Aquilegia oxysepala HOM05D002474 ORTHO05D007142 3.0e-30 135.2 98 65.3
CANSAT01G1519 Cannabis sativa HOM05D002474 ORTHO05D007142 3.0e-30 135.2 97 67.0
Carub.0007s3576 Capsella rubella HOM05D002474 ORTHO05D007142 3.0e-30 135.2 98 65.3
Gohir.A11G312300 Gossypium hirsutum HOM05D002474 ORTHO05D007142 3.0e-30 135.2 100 65.0
arahy.Tifrunner.gnm1.ann1.1P8C08 Arachis hypogaea HOM05D002474 ORTHO05D007142 5.2e-30 134.4 105 61.9
Haze_09959 Corylus avellana HOM05D002474 ORTHO05D007142 5.2e-30 134.4 97 63.9
Sabra01G0175800 Salix brachista HOM05D002474 ORTHO05D007142 5.2e-30 134.4 99 65.7
Sp7g02120 Schrenkiella parvula HOM05D002474 ORTHO05D007142 5.2e-30 134.4 97 62.9
Cc02_g23800 Coffea canephora HOM05D002474 ORTHO05D007142 1.5e-29 132.9 104 61.5
CsaV3_3G006770 Cucumis sativus L. HOM05D002474 ORTHO05D007142 1.5e-29 132.9 101 61.4
Eucgr.L00744 Eucalyptus grandis HOM05D002474 ORTHO05D007142 2.0e-29 132.5 101 62.4
Aa31LG9G1650 Aethionema arabicum HOM05D002474 ORTHO05D007142 2.6e-29 132.1 97 68.0
Duzib268G0482 Durio zibethinus HOM05D002474 ORTHO05D007142 2.6e-29 132.1 101 63.4
QL02p103729 Quercus lobata HOM05D002474 ORTHO05D007142 2.6e-29 132.1 97 63.9
AT5G39960 Arabidopsis thaliana HOM05D002474 ORTHO05D007142 3.4e-29 131.7 97 64.9
Medtr4g134500 Medicago truncatula HOM05D002474 ORTHO05D007142 4.4e-29 131.3 97 64.9
AL7G50170 Arabidopsis lyrata HOM05D002474 ORTHO05D007142 5.7e-29 131.0 98 65.3
FAN16G1529 Fragaria x ananassa HOM05D002474 ORTHO05D007142 5.7e-29 131.0 97 66.0
MBI03_g28951_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D007142 7.5e-29 130.6 102 63.7
Thhalv10027686m.g Eutrema salsugineum HOM05D002474 ORTHO05D007142 9.8e-29 130.2 98 66.3
Zm00001eb119500 Zea mays HOM05D002474 ORTHO05D007142 9.8e-29 130.2 100 61.0
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.3e-28 129.8 103 60.2
PSO339G3087 Papaver somniferum HOM05D002474 ORTHO05D007142 1.3e-28 129.8 103 59.2
SGA_v2.0_scaffold254G45227 Striga asiatica HOM05D002474 ORTHO05D007142 1.3e-28 129.8 104 59.6
Prupe.5G038000 Prunus persica HOM05D002474 ORTHO05D007142 1.7e-28 129.4 97 63.9
PGR142G0374 Punica granatum HOM05D002474 ORTHO05D007142 1.7e-28 129.4 98 65.3
Hund06555 Selenicereus undatus HOM05D002474 ORTHO05D007142 1.7e-28 129.4 99 62.6
CARHR262220 Cardamine hirsuta HOM05D002474 ORTHO05D007142 2.8e-28 128.6 97 64.9
VMungo1215G1553 Vigna mungo HOM05D002474 ORTHO05D007142 4.8e-28 127.9 98 62.2
FvH4_4g04950 Fragaria vesca HOM05D002474 ORTHO05D007142 8.3e-28 127.1 87 67.8
Lsat_1_v5_gn_9_123041 Lactuca sativa HOM05D002474 ORTHO05D007142 1.1e-27 126.7 104 62.5
PSO170G2680 Papaver somniferum HOM05D002474 ORTHO05D007142 1.4e-27 126.3 104 56.7
Thecc.06G063000 Theobroma cacao HOM05D002474 ORTHO05D007142 1.8e-27 125.9 98 61.2
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 2.4e-27 125.6 103 59.2
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 2.4e-27 125.6 103 59.2
BolC4t26229H Brassica oleracea HOM05D002474 ORTHO05D007142 2.4e-27 125.6 103 59.2
BraA04t16929Z Brassica rapa HOM05D002474 ORTHO05D007142 2.4e-27 125.6 103 59.2
arahy.Tifrunner.gnm1.ann1.W79BEX Arachis hypogaea HOM05D002474 ORTHO05D007142 5.4e-27 124.4 83 67.5
HPP92_023931 Vanilla planifolia HOM05D002474 ORTHO05D007142 3.8e-25 118.2 104 57.7
ATR0041G021 Amborella trichopoda HOM05D002474 ORTHO05D007142 6.5e-25 117.5 101 59.4
SEGI_11681 Sequoiadendron giganteum HOM05D002474 ORTHO05D007142 4.2e-24 114.8 107 53.3
SHI11365 Sapria himalayana HOM05D002474 ORTHO05D007142 2.8e-23 112.1 71 69.0
unitig_82.g27138 Utricularia gibba HOM05D002474 ORTHO05D007142 2.8e-23 112.1 103 55.3
COL.COLO4_31096 Corchorus olitorius HOM05D002474 ORTHO05D007142 1.6e-18 96.3 99 53.5
Pp3c21_12090 Physcomitrium patens HOM05D002474 ORTHO05D007142 5.2e-14 81.3 66 59.1
Mapoly0007s0284 Marchantia polymorpha HOM05D002474 ORTHO05D007142 1.2e-13 80.1 73 56.2
Mapoly0252s0004 Marchantia polymorpha HOM05D002474 ORTHO05D007142 1.2e-13 80.1 73 56.2
SMO172G0210 Selaginella moellendorffii HOM05D002474 ORTHO05D007142 1.5e-13 79.7 66 54.5
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.4e-13 78.6 99 41.4
CBR_g2954 Chara braunii HOM05D002474 ORTHO05D007142 1.7e-12 76.3 75 52.0
CDE05G1525 Ceratophyllum demersum HOM05D002474 ORTHO05D007142 9.2e-11 70.5 38 78.9
HPP92_023952 Vanilla planifolia HOM05D002474 ORTHO05D007142 1.7e-09 66.2 39 74.4
Glyma.17G002702 Glycine max HOM05D002474 ORTHO05D007142 1.2e-07 60.1 30 86.7


User provided reference genes

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