Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001376 Daucus carota HOM05D004317 ORTHO05D005031 2.0e-186 655.6 329 100.0
DCAR_000764 Daucus carota HOM05D004317 ORTHO05D005031 2.9e-124 449.1 345 71.3
Migut.H02443 Erythranthe guttata HOM05D004317 ORTHO05D005031 1.6e-114 416.8 346 67.1
MSTRG.2526 Avicennia marina HOM05D004317 ORTHO05D005031 4.6e-114 415.2 346 68.2
Peaxi162Scf00106g01615 Petunia axillaris HOM05D004317 ORTHO05D005031 2.3e-113 412.9 347 67.7
Oeu028366.1 Olea europaea HOM05D004317 ORTHO05D005031 1.9e-112 409.8 346 66.8
Dinv19475 Davidia involucrata HOM05D004317 ORTHO05D005031 4.3e-112 408.7 346 66.8
Nitab4.5_0004977g0020 Nicotiana tabacum HOM05D004317 ORTHO05D005031 2.1e-111 406.4 346 67.6
Dinv42682 Davidia involucrata HOM05D004317 ORTHO05D005031 8.1e-111 404.4 346 66.2
Lj4A864T19 Lonicera japonica HOM05D004317 ORTHO05D005031 1.1e-110 404.1 347 64.3
FvH4_1g22810 Fragaria vesca HOM05D004317 ORTHO05D005031 2.0e-109 399.8 347 65.4
FAN19G1483 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.6e-109 399.4 347 65.4
Nitab4.5_0000184g0250 Nicotiana tabacum HOM05D004317 ORTHO05D005031 2.6e-109 399.4 346 67.1
Rhsim10G0148900 Rhododendron simsii HOM05D004317 ORTHO05D005031 3.4e-109 399.1 347 66.3
RcHm_v2.0_Chr2g0117121 Rosa chinensis HOM05D004317 ORTHO05D005031 5.8e-109 398.3 346 65.3
FAN28G2916 Fragaria x ananassa HOM05D004317 ORTHO05D005031 7.6e-109 397.9 347 65.4
Thecc.01G114600 Theobroma cacao HOM05D004317 ORTHO05D005031 1.3e-108 397.1 347 65.7
Peaxi162Scf00270g00910 Petunia axillaris HOM05D004317 ORTHO05D005031 1.7e-108 396.7 347 65.7
FAN26G1550 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.9e-108 396.0 347 65.1
COL.COLO4_10999 Corchorus olitorius HOM05D004317 ORTHO05D005031 1.4e-107 393.7 348 65.5
CAN.G241.17 Capsicum annuum HOM05D004317 ORTHO05D005031 1.9e-107 393.3 347 66.0
Sopen04g023080 Solanum pennellii HOM05D004317 ORTHO05D005031 2.4e-107 392.9 346 65.9
Duzib147G1288 Durio zibethinus HOM05D004317 ORTHO05D005031 3.2e-107 392.5 347 64.8
Cpa.g.sc191.9 Carica papaya HOM05D004317 ORTHO05D005031 5.4e-107 391.7 347 64.3
FAN23G2660 Fragaria x ananassa HOM05D004317 ORTHO05D005031 5.4e-107 391.7 347 64.3
Potri.005G085100 Populus trichocarpa HOM05D004317 ORTHO05D005031 5.4e-107 391.7 347 64.8
PGSC0003DMG402031196 Solanum tuberosum HOM05D004317 ORTHO05D005031 7.1e-107 391.3 347 65.4
Solyc04g051700.3 Solanum lycopersicum HOM05D004317 ORTHO05D005031 2.1e-106 389.8 347 65.4
Hma1.2p1_0375F.1_g138790 Hydrangea macrophylla HOM05D004317 ORTHO05D005031 6.0e-106 388.3 347 64.6
Cfa002764 Carpinus fangiana HOM05D004317 ORTHO05D005031 7.8e-106 387.9 348 64.7
Duzib264G0693 Durio zibethinus HOM05D004317 ORTHO05D005031 7.8e-106 387.9 348 64.1
MD15G1445400 Malus domestica HOM05D004317 ORTHO05D005031 1.0e-105 387.5 348 64.7
QL06p031876 Quercus lobata HOM05D004317 ORTHO05D005031 1.3e-105 387.1 348 63.8
Sabra05G0069900 Salix brachista HOM05D004317 ORTHO05D005031 1.3e-105 387.1 351 64.1
THA.LOC104819313 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.3e-105 387.1 349 63.0
TAR625G1069 Trochodendron aralioides HOM05D004317 ORTHO05D005031 1.3e-105 387.1 347 64.6
CANSAT01G1092 Cannabis sativa HOM05D004317 ORTHO05D005031 2.3e-105 386.3 347 62.2
CiPaw.04G091000 Carya illinoinensis HOM05D004317 ORTHO05D005031 1.1e-104 384.0 347 63.1
Lsat_1_v5_gn_6_7740 Lactuca sativa HOM05D004317 ORTHO05D005031 1.9e-104 383.3 344 61.9
Cc11_g00180 Coffea canephora HOM05D004317 ORTHO05D005031 2.5e-104 382.9 362 61.6
Atru.chr4.2810 Acer truncatum HOM05D004317 ORTHO05D005031 3.3e-104 382.5 348 64.1
Eucgr.H04871 Eucalyptus grandis HOM05D004317 ORTHO05D005031 4.3e-104 382.1 347 61.7
Ciclev10026038m.g Citrus clementina HOM05D004317 ORTHO05D005031 5.6e-104 381.7 347 63.4
Oeu015853.1 Olea europaea HOM05D004317 ORTHO05D005031 3.6e-103 379.0 347 63.7
Haze_25055 Corylus avellana HOM05D004317 ORTHO05D005031 4.8e-103 378.6 372 61.0
AT5G64813 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 8.1e-103 377.9 351 63.5
Thhalv10004519m.g Eutrema salsugineum HOM05D004317 ORTHO05D005031 8.1e-103 377.9 350 62.9
TPR.G2235 Trifolium pratense HOM05D004317 ORTHO05D005031 1.1e-102 377.5 347 62.0
Ca_17692_v3 Cicer arietinum L. HOM05D004317 ORTHO05D005031 1.4e-102 377.1 347 62.0
MD08G1250200 Malus domestica HOM05D004317 ORTHO05D005031 1.4e-102 377.1 350 63.4
AL8G42280 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 4.0e-102 375.6 351 63.2
THA.LOC104799321 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.2e-101 374.0 349 61.3
Carub.0008s2563 Capsella rubella HOM05D004317 ORTHO05D005031 1.5e-101 373.6 351 63.0
CARHR278810 Cardamine hirsuta HOM05D004317 ORTHO05D005031 2.0e-101 373.2 350 62.6
Gohir.D11G232000 Gossypium hirsutum HOM05D004317 ORTHO05D005031 2.0e-101 373.2 347 62.8
GSVIVG01022244001 Vitis vinifera HOM05D004317 ORTHO05D005031 2.0e-101 373.2 348 62.4
HanXRQChr02g0047931 Helianthus annuus HOM05D004317 ORTHO05D005031 2.6e-101 372.9 346 60.7
Sp2g27880 Schrenkiella parvula HOM05D004317 ORTHO05D005031 2.6e-101 372.9 350 63.4
Gorai.007G245100 Gossypium raimondii HOM05D004317 ORTHO05D005031 4.5e-101 372.1 347 62.5
Medtr8g091980 Medicago truncatula HOM05D004317 ORTHO05D005031 4.5e-101 372.1 355 61.4
Psat7g050920 Pisum sativum HOM05D004317 ORTHO05D005031 4.5e-101 372.1 347 61.7
vmacro12895 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 5.8e-101 371.7 399 57.6
ClCG02G000980 Citrullus lanatus HOM05D004317 ORTHO05D005031 7.6e-101 371.3 347 62.0
Gohir.D11G057400 Gossypium hirsutum HOM05D004317 ORTHO05D005031 7.6e-101 371.3 344 62.5
Gorai.007G062600 Gossypium raimondii HOM05D004317 ORTHO05D005031 7.6e-101 371.3 344 62.5
Lj4g0017689 Lotus japonicus HOM05D004317 ORTHO05D005031 7.6e-101 371.3 349 60.5
MELO3C020962.2 Cucumis melo HOM05D004317 ORTHO05D005031 9.9e-101 370.9 347 62.0
CsaV3_2G017700 Cucumis sativus L. HOM05D004317 ORTHO05D005031 9.9e-101 370.9 347 62.0
Lalb_Chr12g0203501 Lupinus albus HOM05D004317 ORTHO05D005031 9.9e-101 370.9 347 62.2
VMungo0251G1621 Vigna mungo HOM05D004317 ORTHO05D005031 1.3e-100 370.5 346 61.8
SalBow6G4125 Salvia bowleyana HOM05D004317 ORTHO05D005031 1.7e-100 370.2 331 64.4
BcaC01g02714 Brassica carinata HOM05D004317 ORTHO05D005031 2.2e-100 369.8 350 62.0
C03p61360 Brassica napus HOM05D004317 ORTHO05D005031 2.2e-100 369.8 350 62.0
Glyma.05G184400 Glycine max HOM05D004317 ORTHO05D005031 3.8e-100 369.0 348 61.5
PSO170G2871 Papaver somniferum HOM05D004317 ORTHO05D005031 3.8e-100 369.0 345 59.1
vmacro18639 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 3.8e-100 369.0 344 62.5
Gohir.A11G053900 Gossypium hirsutum HOM05D004317 ORTHO05D005031 4.9e-100 368.6 344 62.2
A06p31600 Brassica napus HOM05D004317 ORTHO05D005031 8.4e-100 367.9 350 61.4
Duzib187G1335 Durio zibethinus HOM05D004317 ORTHO05D005031 1.1e-99 367.5 348 62.1
Phvul.002G265300 Phaseolus vulgaris HOM05D004317 ORTHO05D005031 1.9e-99 366.7 347 61.4
Sed0006410 Sechium edule HOM05D004317 ORTHO05D005031 3.2e-99 365.9 347 61.1
BcaB02g09831 Brassica carinata HOM05D004317 ORTHO05D005031 5.4e-99 365.2 351 62.1
Sc07g0001570 Simmondsia chinensis HOM05D004317 ORTHO05D005031 1.6e-98 363.6 347 61.4
BcaB04g19996 Brassica carinata HOM05D004317 ORTHO05D005031 2.1e-98 363.2 349 61.6
HanXRQChr03g0078021 Helianthus annuus HOM05D004317 ORTHO05D005031 2.1e-98 363.2 347 59.4
Glyma.08G142300 Glycine max HOM05D004317 ORTHO05D005031 2.7e-98 362.8 348 60.3
Nn1g05158 Nelumbo nucifera HOM05D004317 ORTHO05D005031 6.0e-98 361.7 347 59.9
Lalb_Chr13g0296231 Lupinus albus HOM05D004317 ORTHO05D005031 7.9e-98 361.3 346 60.4
PGR102G1870 Punica granatum HOM05D004317 ORTHO05D005031 1.3e-97 360.5 348 60.3
PSO210G1492 Papaver somniferum HOM05D004317 ORTHO05D005031 3.0e-97 359.4 347 58.5
Potri.007G080100 Populus trichocarpa HOM05D004317 ORTHO05D005031 3.0e-97 359.4 316 65.8
arahy.Tifrunner.gnm1.ann1.N9CCL6 Arachis hypogaea HOM05D004317 ORTHO05D005031 3.9e-97 359.0 365 58.1
TWI79G1778 Tripterygium wilfordii HOM05D004317 ORTHO05D005031 3.9e-97 359.0 316 64.2
Aa31LG1G17120 Aethionema arabicum HOM05D004317 ORTHO05D005031 5.1e-97 358.6 347 61.1
MSTRG.23310 Avicennia marina HOM05D004317 ORTHO05D005031 1.1e-96 357.5 346 60.1
AUR62027164 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.5e-96 357.1 347 58.5
MBI01_g44371_MAGBIO Magnolia biondii HOM05D004317 ORTHO05D005031 1.9e-96 356.7 362 58.8
BolC3t18396H Brassica oleracea HOM05D004317 ORTHO05D005031 7.4e-96 354.8 378 57.4
Hund03530 Selenicereus undatus HOM05D004317 ORTHO05D005031 7.4e-96 354.8 346 59.2
Rhsim08G0005500 Rhododendron simsii HOM05D004317 ORTHO05D005031 9.6e-96 354.4 342 60.8
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 1.3e-95 354.0 363 57.6
EL10Ac6g14771 Beta vulgaris HOM05D004317 ORTHO05D005031 1.6e-95 353.6 347 58.8
Aqoxy6G00452 Aquilegia oxysepala HOM05D004317 ORTHO05D005031 2.1e-95 353.2 350 58.3
BraA09t36537Z Brassica rapa HOM05D004317 ORTHO05D005031 1.1e-94 350.9 351 61.0
A09p08860 Brassica napus HOM05D004317 ORTHO05D005031 1.4e-94 350.5 351 60.7
CiPaw.03G133600 Carya illinoinensis HOM05D004317 ORTHO05D005031 1.8e-94 350.1 326 62.0
BraA06t26097Z Brassica rapa HOM05D004317 ORTHO05D005031 2.4e-94 349.7 386 55.7
Sabra07G0067200 Salix brachista HOM05D004317 ORTHO05D005031 3.1e-94 349.4 418 53.1
arahy.Tifrunner.gnm1.ann1.8U6WSJ Arachis hypogaea HOM05D004317 ORTHO05D005031 5.3e-94 348.6 344 59.6
C09p10280 Brassica napus HOM05D004317 ORTHO05D005031 5.3e-94 348.6 351 60.1
BolC9t53928H Brassica oleracea HOM05D004317 ORTHO05D005031 5.3e-94 348.6 351 60.1
arahy.Tifrunner.gnm1.ann1.QW6G0A Arachis hypogaea HOM05D004317 ORTHO05D005031 6.9e-94 348.2 346 59.5
BcaC04g23277 Brassica carinata HOM05D004317 ORTHO05D005031 6.9e-94 348.2 351 60.4
Sc03g0004440 Simmondsia chinensis HOM05D004317 ORTHO05D005031 9.0e-94 347.8 348 59.5
Ah.02g125940 Amaranthus hybridus HOM05D004317 ORTHO05D005031 1.2e-93 347.4 348 57.5
Lj2C567G4 Lonicera japonica HOM05D004317 ORTHO05D005031 4.5e-93 345.5 415 53.0
Sed0024973 Sechium edule HOM05D004317 ORTHO05D005031 9.3e-91 337.8 343 57.7
unitig_0.g479 Utricularia gibba HOM05D004317 ORTHO05D005031 2.1e-90 336.7 351 56.4
ECA240G0243 Erigeron canadensis HOM05D004317 ORTHO05D005031 2.7e-90 336.3 347 56.8
TAR381G0083 Trochodendron aralioides HOM05D004317 ORTHO05D005031 2.7e-90 336.3 350 58.9
Gohir.A11G197500 Gossypium hirsutum HOM05D004317 ORTHO05D005031 4.6e-90 335.5 349 58.7
Ah.05g168370 Amaranthus hybridus HOM05D004317 ORTHO05D005031 7.9e-90 334.7 347 55.9
ATR1120G075 Amborella trichopoda HOM05D004317 ORTHO05D005031 3.0e-89 332.8 316 58.5
CDE05G1892 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 5.1e-89 332.0 346 56.4
GSVIVG01013682001 Vitis vinifera HOM05D004317 ORTHO05D005031 5.1e-89 332.0 350 56.9
AL6G20330 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 8.7e-89 331.3 346 57.5
AUR62034924 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.1e-88 330.9 356 56.2
Nn5g28875 Nelumbo nucifera HOM05D004317 ORTHO05D005031 4.3e-88 328.9 316 58.9
Sp6g33500 Schrenkiella parvula HOM05D004317 ORTHO05D005031 5.6e-88 328.6 346 56.9
Carub.0006s0835 Capsella rubella HOM05D004317 ORTHO05D005031 6.2e-87 325.1 341 57.8
Os10g0135200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 3.1e-86 322.8 354 54.5
Prupe.1G587300 Prunus persica HOM05D004317 ORTHO05D005031 2.2e-84 316.6 332 57.5
Lalb_Chr11g0068101 Lupinus albus HOM05D004317 ORTHO05D005031 2.9e-84 316.2 341 54.5
Zm00001eb224280 Zea mays HOM05D004317 ORTHO05D005031 3.8e-84 315.8 349 53.0
Rhsim07G0116100 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.1e-83 314.3 364 54.4
EL10Ac1g01634 Beta vulgaris HOM05D004317 ORTHO05D005031 1.4e-83 313.9 398 49.0
AT5G09910 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 1.9e-83 313.5 346 55.2
Zm00001eb398890 Zea mays HOM05D004317 ORTHO05D005031 5.5e-83 312.0 349 52.1
Manes.12G143400 Manihot esculenta HOM05D004317 ORTHO05D005031 1.1e-80 304.3 279 62.4
Os03g0242200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 3.7e-79 299.3 351 51.9
AUR62003298 Chenopodium quinoa HOM05D004317 ORTHO05D005031 4.5e-77 292.4 311 55.9
PSO541G5773 Papaver somniferum HOM05D004317 ORTHO05D005031 2.5e-75 286.6 331 52.0
SGA_v2.0_scaffold2G01290 Striga asiatica HOM05D004317 ORTHO05D005031 3.3e-72 276.2 377 46.4
AUR62026610 Chenopodium quinoa HOM05D004317 ORTHO05D005031 4.8e-71 272.3 228 65.4
HPP92_009117 Vanilla planifolia HOM05D004317 ORTHO05D005031 2.4e-70 270.0 295 54.6
PSO675G4086 Papaver somniferum HOM05D004317 ORTHO05D005031 5.1e-65 252.3 284 53.2
HPP92_021785 Vanilla planifolia HOM05D004317 ORTHO05D005031 1.1e-64 251.1 285 53.0
Mapoly0088s0081 Marchantia polymorpha HOM05D004317 ORTHO05D005031 1.3e-55 221.1 353 44.2
Oeu031971.2 Olea europaea HOM05D004317 ORTHO05D005031 4.1e-54 216.1 274 49.6
ECA233G0885 Erigeron canadensis HOM05D004317 ORTHO05D005031 1.4e-49 201.1 161 66.5
SMO364G0333 Selaginella moellendorffii HOM05D004317 ORTHO05D005031 1.7e-47 194.1 219 54.3
CDE11G1235 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 2.8e-39 166.8 174 55.2
CARHR203430 Cardamine hirsuta HOM05D004317 ORTHO05D005031 4.7e-34 149.4 160 54.4
Nn3g19889 Nelumbo nucifera HOM05D004317 ORTHO05D005031 5.7e-32 142.5 94 73.4
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 6.3e-31 139.0 111 63.1
CBR_g23133 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-24 115.5 126 45.2
CDE11G1206 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 1.1e-17 95.1 112 53.6
Actinidia33578 Actinidia chinensis HOM05D004317 ORTHO05D005031 1.8e-17 94.4 82 65.9
SalBow5G1590 Salvia bowleyana HOM05D004317 ORTHO05D005031 8.9e-17 92.0 62 74.2
CARHR203420 Cardamine hirsuta HOM05D004317 ORTHO05D005031 2.1e-13 80.9 118 47.5
SEGI_23806 Sequoiadendron giganteum HOM05D004317 ORTHO05D005031 2.3e-09 67.4 50 62.0
AL2G19240 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 9.9e-08 62.0 72 51.4
Glyma.17G174700 Glycine max HOM05D004317 ORTHO05D005031 2.9e-07 60.5 65 49.2
MCO10G219 Micromonas commoda HOM05D004317 ORTHO05D005031 4.9e-07 59.7 230 28.7
COL.COLO4_36527 Corchorus olitorius HOM05D002016 ORTHO05D015438 1.9e-06 57.8 34 79.4


User provided reference genes

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