Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001344 Daucus carota HOM05D003214 ORTHO05D004330 0.0e+00 1728.0 923 100.0
DCAR_001345 Daucus carota HOM05D003214 ORTHO05D004330 0.0e+00 1634.0 878 94.1
DCAR_005301 Daucus carota HOM05D032355 ORTHO05D004330 2.5e-189 666.8 925 45.9
DCAR_022960 Daucus carota HOM05D003214 ORTHO05D004330 7.9e-188 661.8 616 61.5
DCAR_006804 Daucus carota HOM05D032355 ORTHO05D004330 2.3e-171 607.1 890 44.8
Lj5A176G61 Lonicera japonica HOM05D003214 ORTHO05D004330 6.9e-168 595.5 614 62.4
COL.COLO4_17378 Corchorus olitorius HOM05D003214 ORTHO05D004330 1.5e-167 594.3 604 60.3
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.5e-167 594.3 598 55.4
QL01p046809 Quercus lobata HOM05D003214 ORTHO05D004330 2.0e-167 594.0 608 54.1
CSS0041068 Camellia sinensis var. sinensis HOM05D003214 ORTHO05D004330 2.6e-167 593.6 598 55.2
Duzib052G0573 Durio zibethinus HOM05D003214 ORTHO05D004330 1.0e-166 591.7 603 58.4
Cfa005285 Carpinus fangiana HOM05D003214 ORTHO05D004330 2.9e-166 590.1 588 55.4
Thecc.02G055400 Theobroma cacao HOM05D003214 ORTHO05D004330 1.1e-165 588.2 603 53.7
Ca_03296_v3 Cicer arietinum L. HOM05D003214 ORTHO05D004330 9.4e-165 585.1 616 55.5
ECA196G0013 Erigeron canadensis HOM05D003214 ORTHO05D004330 3.6e-164 583.2 598 54.2
Hma1.2p1_0144F.1_g064770 Hydrangea macrophylla HOM05D003214 ORTHO05D004330 4.7e-164 582.8 599 56.1
MD05G1125000 Malus domestica HOM05D003214 ORTHO05D004330 7.9e-164 582.0 583 60.0
Prupe.8G169000 Prunus persica HOM05D003214 ORTHO05D004330 7.9e-164 582.0 598 54.2
Actinidia20525 Actinidia chinensis HOM05D003214 ORTHO05D004330 1.8e-163 580.9 598 56.4
Gohir.A01G170600 Gossypium hirsutum HOM05D003214 ORTHO05D004330 1.8e-163 580.9 603 58.4
MSTRG.12021 Avicennia marina HOM05D003214 ORTHO05D004330 2.3e-163 580.5 587 54.7
TWI31G0460 Tripterygium wilfordii HOM05D003214 ORTHO05D004330 2.3e-163 580.5 550 63.1
VMungo0720G0502 Vigna mungo HOM05D003214 ORTHO05D004330 2.3e-163 580.5 603 61.7
MD10G1127800 Malus domestica HOM05D003214 ORTHO05D004330 3.0e-163 580.1 588 61.6
GSVIVG01023974001 Vitis vinifera HOM05D003214 ORTHO05D004330 3.0e-163 580.1 599 53.6
Glyma.20G106300 Glycine max HOM05D003214 ORTHO05D004330 3.9e-163 579.7 603 53.4
Gorai.002G200500 Gossypium raimondii HOM05D003214 ORTHO05D004330 5.2e-163 579.3 603 58.2
Phvul.007G017800 Phaseolus vulgaris HOM05D003214 ORTHO05D004330 8.8e-163 578.6 603 61.5
ClCG02G012090 Citrullus lanatus HOM05D003214 ORTHO05D004330 2.0e-162 577.4 577 55.6
Ciclev10027778m.g Citrus clementina HOM05D003214 ORTHO05D004330 2.6e-162 577.0 603 53.9
CANSAT25G3225 Cannabis sativa HOM05D003214 ORTHO05D004330 3.3e-162 576.6 644 51.9
SGA_v2.0_scaffold196G40882 Striga asiatica HOM05D003214 ORTHO05D004330 5.7e-162 575.9 588 60.2
CsaV3_2G016250 Cucumis sativus L. HOM05D003214 ORTHO05D004330 7.4e-162 575.5 588 54.8
Psat6g232040 Pisum sativum HOM05D003214 ORTHO05D004330 7.4e-162 575.5 604 56.8
Manes.11G097900 Manihot esculenta HOM05D003214 ORTHO05D004330 2.2e-161 573.9 590 59.7
Gohir.D01G161600 Gossypium hirsutum HOM05D003214 ORTHO05D004330 3.7e-161 573.2 603 57.7
TPR.G2434 Trifolium pratense HOM05D003214 ORTHO05D004330 4.8e-161 572.8 603 60.9
Glyma.10G283400 Glycine max HOM05D003214 ORTHO05D004330 8.2e-161 572.0 603 56.1
Medtr1g112920 Medicago truncatula HOM05D003214 ORTHO05D004330 1.4e-160 571.2 602 57.3
Migut.E01296 Erythranthe guttata HOM05D003214 ORTHO05D004330 3.1e-160 570.1 588 53.6
FAN24G0254 Fragaria x ananassa HOM05D003214 ORTHO05D004330 3.1e-160 570.1 587 53.7
RcHm_v2.0_Chr6g0278851 Rosa chinensis HOM05D003214 ORTHO05D004330 3.1e-160 570.1 603 57.9
arahy.Tifrunner.gnm1.ann1.L5LJLM Arachis hypogaea HOM05D003214 ORTHO05D004330 7.0e-160 568.9 625 59.7
Cc09_g10320 Coffea canephora HOM05D003214 ORTHO05D004330 7.0e-160 568.9 598 53.2
Gohir.A01G002000 Gossypium hirsutum HOM05D003214 ORTHO05D004330 9.1e-160 568.5 588 61.1
Gohir.D01G001600 Gossypium hirsutum HOM05D003214 ORTHO05D004330 9.1e-160 568.5 588 61.2
HanXRQChr02g0040581 Helianthus annuus HOM05D003214 ORTHO05D004330 9.1e-160 568.5 593 53.8
CiPaw.06G120100 Carya illinoinensis HOM05D003214 ORTHO05D004330 2.0e-159 567.4 601 52.7
Aqoxy5G01104 Aquilegia oxysepala HOM05D003214 ORTHO05D004330 2.6e-159 567.0 598 58.4
vmacro02292 Vaccinium macrocarpon HOM05D003214 ORTHO05D004330 2.6e-159 567.0 595 53.6
Gorai.002G002200 Gossypium raimondii HOM05D003214 ORTHO05D004330 5.9e-159 565.8 588 61.2
FvH4_2g15650 Fragaria vesca HOM05D003214 ORTHO05D004330 7.7e-159 565.5 603 52.2
HanXRQChr04g0110121 Helianthus annuus HOM05D003214 ORTHO05D004330 7.7e-159 565.5 598 52.3
Potri.004G177700 Populus trichocarpa HOM05D003214 ORTHO05D004330 1.0e-158 565.1 583 53.5
Sed0023751 Sechium edule HOM05D003214 ORTHO05D004330 1.0e-158 565.1 603 53.2
MELO3C020836.2 Cucumis melo HOM05D003214 ORTHO05D004330 1.7e-158 564.3 590 59.3
FAN27G1670 Fragaria x ananassa HOM05D003214 ORTHO05D004330 1.7e-158 564.3 595 56.8
Nitab4.5_0004867g0010 Nicotiana tabacum HOM05D003214 ORTHO05D004330 1.7e-158 564.3 589 60.8
CSS0005434 Camellia sinensis var. sinensis HOM05D003214 ORTHO05D004330 2.2e-158 563.9 583 54.7
THA.LOC104804319 Tarenaya hassleriana HOM05D003214 ORTHO05D004330 2.9e-158 563.5 588 60.4
Actinidia18041 Actinidia chinensis HOM05D003214 ORTHO05D004330 5.0e-158 562.8 607 52.1
FAN15G1272 Fragaria x ananassa HOM05D003214 ORTHO05D004330 5.0e-158 562.8 603 56.4
TWI75G1738 Tripterygium wilfordii HOM05D003214 ORTHO05D004330 5.0e-158 562.8 588 52.2
Lj5g0003348 Lotus japonicus HOM05D003214 ORTHO05D004330 6.5e-158 562.4 603 57.0
Potri.009G138200 Populus trichocarpa HOM05D003214 ORTHO05D004330 8.5e-158 562.0 588 52.9
THA.LOC104819659 Tarenaya hassleriana HOM05D003214 ORTHO05D004330 1.9e-157 560.8 588 52.4
Nn1g08447 Nelumbo nucifera HOM05D003214 ORTHO05D004330 2.5e-157 560.5 588 52.6
Sopen01g053820 Solanum pennellii HOM05D003214 ORTHO05D004330 3.2e-157 560.1 583 60.9
Nn5g27766 Nelumbo nucifera HOM05D003214 ORTHO05D004330 4.2e-157 559.7 588 52.2
Carub.0003s3076 Capsella rubella HOM05D003214 ORTHO05D004330 5.5e-157 559.3 617 59.2
Lalb_Chr02g0143501 Lupinus albus HOM05D003214 ORTHO05D004330 1.2e-156 558.1 598 52.5
CAN.G588.99 Capsicum annuum HOM05D003214 ORTHO05D004330 2.1e-156 557.4 588 52.2
Lalb_Chr21g0307001 Lupinus albus HOM05D003214 ORTHO05D004330 2.1e-156 557.4 588 59.9
Solyc01g111780.4 Solanum lycopersicum HOM05D003214 ORTHO05D004330 6.1e-156 555.8 583 52.7
PGR142G0610 Punica granatum HOM05D003214 ORTHO05D004330 1.0e-155 555.1 598 51.7
Thhalv10022538m.g Eutrema salsugineum HOM05D003214 ORTHO05D004330 1.4e-155 554.7 620 57.6
PSO675G3496 Papaver somniferum HOM05D003214 ORTHO05D004330 1.8e-155 554.3 613 50.9
Rhsim11G0193600 Rhododendron simsii HOM05D003214 ORTHO05D004330 1.8e-155 554.3 630 50.6
EL10Ac8g18581 Beta vulgaris HOM05D003214 ORTHO05D004330 5.2e-155 552.7 602 54.5
FAN20G2853 Fragaria x ananassa HOM05D003214 ORTHO05D004330 1.5e-154 551.2 636 49.5
Manes.05G143000 Manihot esculenta HOM05D003214 ORTHO05D004330 2.0e-154 550.8 594 51.9
MSTRG.13818 Avicennia marina HOM05D003214 ORTHO05D004330 4.4e-154 549.7 588 55.8
TAR625G1234 Trochodendron aralioides HOM05D003214 ORTHO05D004330 9.7e-154 548.5 572 55.8
Aa31LG8G14130 Aethionema arabicum HOM05D003214 ORTHO05D004330 6.3e-153 545.8 620 58.7
CARHR107250 Cardamine hirsuta HOM05D003214 ORTHO05D004330 6.3e-153 545.8 598 59.2
Sabra04G0119600 Salix brachista HOM05D003214 ORTHO05D004330 1.8e-152 544.3 626 51.4
Haze_02105 Corylus avellana HOM05D003214 ORTHO05D004330 3.1e-152 543.5 623 50.9
Sp3g30230 Schrenkiella parvula HOM05D003214 ORTHO05D004330 4.1e-152 543.1 620 56.8
AT2G16950 Arabidopsis thaliana HOM05D003214 ORTHO05D004330 7.0e-152 542.3 617 49.8
BcaC04g23002 Brassica carinata HOM05D003214 ORTHO05D004330 7.7e-151 538.9 583 59.2
AUR62033441 Chenopodium quinoa HOM05D003214 ORTHO05D004330 7.7e-151 538.9 628 52.1
GSVIVG01008744001 Vitis vinifera HOM05D003214 ORTHO05D004330 2.9e-150 537.0 593 55.1
Sc15g0002120 Simmondsia chinensis HOM05D003214 ORTHO05D004330 3.8e-150 536.6 602 48.8
Eucgr.F03709 Eucalyptus grandis HOM05D003214 ORTHO05D004330 6.5e-150 535.8 599 50.8
Atru.chr13.222 Acer truncatum HOM05D003214 ORTHO05D004330 8.5e-150 535.4 591 50.8
C09p13150 Brassica napus HOM05D003214 ORTHO05D004330 1.9e-149 534.3 587 58.9
Sed0004428 Sechium edule HOM05D003214 ORTHO05D004330 1.9e-149 534.3 603 49.9
Thecc.08G051200 Theobroma cacao HOM05D003214 ORTHO05D004330 2.5e-149 533.9 598 49.3
BcaB03g16429 Brassica carinata HOM05D003214 ORTHO05D004330 4.2e-149 533.1 620 48.9
BcaB08g34680 Brassica carinata HOM05D003214 ORTHO05D004330 5.5e-149 532.7 620 56.6
BcaC06g36202 Brassica carinata HOM05D003214 ORTHO05D004330 7.2e-149 532.3 620 52.6
BolC9t54210H Brassica oleracea HOM05D003214 ORTHO05D004330 2.7e-148 530.4 593 50.1
A09p11160 Brassica napus HOM05D003214 ORTHO05D004330 4.7e-148 529.6 587 50.3
SEGI_16409 Sequoiadendron giganteum HOM05D003214 ORTHO05D004330 5.2e-147 526.2 587 54.0
PSO170G1418 Papaver somniferum HOM05D003214 ORTHO05D004330 8.8e-147 525.4 598 53.2
Sabra09G0107100 Salix brachista HOM05D003214 ORTHO05D004330 8.8e-147 525.4 661 48.6
A03p46190 Brassica napus HOM05D003214 ORTHO05D004330 1.2e-146 525.0 624 48.6
HPP92_006849 Vanilla planifolia HOM05D003214 ORTHO05D004330 2.0e-146 524.2 597 49.1
PSO210G6165 Papaver somniferum HOM05D003214 ORTHO05D004330 2.6e-146 523.9 598 53.5
AUR62011064 Chenopodium quinoa HOM05D003214 ORTHO05D004330 3.4e-146 523.5 657 50.4
Os04g0691500 Oryza sativa ssp. japonica HOM05D003214 ORTHO05D004330 7.5e-146 522.3 621 51.9
Zm00001eb076490 Zea mays HOM05D003214 ORTHO05D004330 3.7e-145 520.0 600 47.7
BraA07t28204Z Brassica rapa HOM05D003214 ORTHO05D004330 6.3e-145 519.2 621 48.0
C07p06530 Brassica napus HOM05D003214 ORTHO05D004330 8.3e-145 518.8 621 48.0
BolC7t41074H Brassica oleracea HOM05D003214 ORTHO05D004330 1.1e-144 518.5 623 48.0
A07p04130 Brassica napus HOM05D003214 ORTHO05D004330 1.8e-144 517.7 621 47.8
SalBow1G8529 Salvia bowleyana HOM05D003214 ORTHO05D004330 3.1e-144 516.9 601 49.3
Zm00001eb434450 Zea mays HOM05D003214 ORTHO05D004330 7.0e-144 515.8 615 46.7
BraA09t36758Z Brassica rapa HOM05D003214 ORTHO05D004330 1.0e-142 511.9 600 49.0
Duzib093G0144 Durio zibethinus HOM05D003214 ORTHO05D004330 1.1e-141 508.4 550 49.6
PGR031G2444 Punica granatum HOM05D003214 ORTHO05D004330 1.5e-141 508.1 593 48.2
Mapoly0057s0097 Marchantia polymorpha HOM05D003214 ORTHO05D004330 9.5e-141 505.4 589 48.2
arahy.Tifrunner.gnm1.ann1.47PMEA Arachis hypogaea HOM05D003214 ORTHO05D004330 3.4e-138 496.9 625 55.2
BcaC01g02966 Brassica carinata HOM05D003214 ORTHO05D004330 1.2e-135 488.4 617 54.5
Nitab4.5_0003698g0020 Nicotiana tabacum HOM05D003214 ORTHO05D004330 3.5e-135 486.9 589 56.0
Peaxi162Scf00078g01329 Petunia axillaris HOM05D003214 ORTHO05D004330 1.7e-134 484.6 645 46.7
Atru.chr5.3440 Acer truncatum HOM05D003214 ORTHO05D004330 1.0e-131 475.3 530 53.2
C03p57710 Brassica napus HOM05D003214 ORTHO05D004330 1.0e-131 475.3 617 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2863 Anthoceros agrestis HOM05D003214 ORTHO05D004330 4.0e-131 473.4 597 45.2
AL3G49700 Arabidopsis lyrata HOM05D003214 ORTHO05D004330 2.0e-127 461.1 529 57.7
Nitab4.5_0009111g0010 Nicotiana tabacum HOM05D003214 ORTHO05D004330 9.5e-125 452.2 589 46.2
Pp3c16_4650 Physcomitrium patens HOM05D003214 ORTHO05D004330 1.6e-124 451.4 590 48.3
Nitab4.5_0000079g0220 Nicotiana tabacum HOM05D003214 ORTHO05D004330 2.8e-124 450.7 589 45.8
TAR376G0505 Trochodendron aralioides HOM05D003214 ORTHO05D004330 2.3e-123 447.6 599 44.6
SMO174G0083 Selaginella moellendorffii HOM05D003214 ORTHO05D004330 5.2e-123 446.4 589 49.1
Pp3c5_4970 Physcomitrium patens HOM05D003214 ORTHO05D004330 4.4e-122 443.4 625 48.2
Pp3c27_5090 Physcomitrium patens HOM05D003214 ORTHO05D004330 2.2e-121 441.0 591 42.6
CBR_g22065 Chara braunii HOM05D003214 ORTHO05D004330 5.4e-120 436.4 586 50.7
unitig_21.g20525 Utricularia gibba HOM05D003214 ORTHO05D004330 1.4e-115 421.8 506 48.8
Ah.13g069540 Amaranthus hybridus HOM05D003214 ORTHO05D004330 2.6e-114 417.5 449 52.3
Peaxi162Scf00362g00439 Petunia axillaris HOM05D003214 ORTHO05D004330 2.2e-113 414.5 554 44.8
CiPaw.05G085300 Carya illinoinensis HOM05D003214 ORTHO05D004330 2.1e-111 407.9 472 49.6
CDE08G0902 Ceratophyllum demersum HOM05D003214 ORTHO05D004330 7.8e-111 406.0 598 44.8
Dinv14126 Davidia involucrata HOM05D003214 ORTHO05D004330 3.6e-108 397.1 454 52.9
Pp3c6_18200 Physcomitrium patens HOM05D003214 ORTHO05D004330 1.4e-107 395.2 591 40.1
Oeu031591.4 Olea europaea HOM05D003214 ORTHO05D004330 4.4e-106 390.2 788 35.2
Gorai.005G255100 Gossypium raimondii HOM05D003214 ORTHO05D004330 1.0e-102 379.0 579 40.6
Gohir.A03G205850 Gossypium hirsutum HOM05D003214 ORTHO05D004330 3.3e-101 374.0 590 40.0
Dinv41918 Davidia involucrata HOM05D003214 ORTHO05D004330 6.4e-97 359.8 235 76.2
BraA03t13744Z Brassica rapa HOM05D003214 ORTHO05D004330 2.4e-88 331.3 233 70.0
Gohir.D02G227200 Gossypium hirsutum HOM05D003214 ORTHO05D004330 1.6e-84 318.5 559 37.9
ATR0665G341 Amborella trichopoda HOM05D003214 ORTHO05D004330 2.9e-81 307.8 436 53.2
Cpa.g.sc20.112 Carica papaya HOM05D003214 ORTHO05D004330 1.4e-75 288.9 193 73.1
COL.COLO4_26089 Corchorus olitorius HOM05D003214 ORTHO05D004330 1.8e-67 261.9 193 64.8
Haze_26729 Corylus avellana HOM05D003214 ORTHO05D004330 5.9e-66 256.9 601 34.3
CDE06G0864 Ceratophyllum demersum HOM05D003214 ORTHO05D004330 1.4e-64 252.3 204 59.8
DCAR_007785 Daucus carota HOM05D032355 ORTHO05D004109 2.3e-62 245.0 170 75.9
CDE06G1850 Ceratophyllum demersum HOM05D003214 ORTHO05D004330 1.1e-61 242.7 142 81.0
HPP92_006866 Vanilla planifolia HOM05D003214 ORTHO05D004330 1.5e-61 242.3 171 73.1
Cpa.g.sc20.113 Carica papaya HOM05D003214 ORTHO05D004330 2.3e-54 218.4 149 71.8
BolC3t18044H Brassica oleracea HOM05D003214 ORTHO05D004330 5.1e-54 217.2 226 52.7
MCO12G350 Micromonas commoda HOM05D003214 ORTHO05D004330 6.7e-54 216.9 618 26.5
Cre12.g520550 Chlamydomonas reinhardtii HOM05D003214 ORTHO05D004330 3.3e-53 214.5 608 26.8
AT2G16960 Arabidopsis thaliana HOM05D003214 ORTHO05D004330 4.4e-53 214.2 210 54.3
Carub.0003s3078 Capsella rubella HOM05D003214 ORTHO05D004330 2.6e-50 204.9 221 48.9
A05p24600 Brassica napus HOM05D003214 ORTHO05D033598 1.2e-47 196.1 125 72.8
BraA05t21345Z Brassica rapa HOM05D003214 ORTHO05D033598 4.7e-47 194.1 125 72.0
Oeu027804.1 Olea europaea HOM05D003214 ORTHO05D004330 1.4e-46 192.6 135 67.4
Carub.0003s3079 Capsella rubella HOM05D003214 ORTHO05D004330 1.1e-45 189.5 229 46.7
Psat0s626g0200 Pisum sativum HOM05D003214 ORTHO05D004330 2.7e-39 168.3 152 55.9
Cpa.g.sc7210.1 Carica papaya HOM05D003214 ORTHO05D004330 2.6e-37 161.8 102 79.4
SHI05776 Sapria himalayana HOM05D003214 ORTHO05D004330 4.1e-35 154.5 125 62.4
HPP92_006865 Vanilla planifolia HOM05D003214 ORTHO05D004330 2.9e-33 148.3 165 47.3
COL.COLO4_26088 Corchorus olitorius HOM05D003214 ORTHO05D004330 1.7e-28 132.5 82 76.8
VMungo1127G1914 Vigna mungo HOM05D003214 ORTHO05D023725 1.8e-22 112.5 176 42.6
PRCOL_00003157 Prasinoderma coloniale HOM05D003214 ORTHO05D004330 1.5e-21 109.4 676 20.7
AL3G49720 Arabidopsis lyrata HOM05D003214 ORTHO05D004330 7.5e-21 107.1 89 55.1
PSO210G0009 Papaver somniferum HOM05D003214 ORTHO05D013834 3.7e-20 104.8 117 49.6
Gohir.D11G257966 Gossypium hirsutum HOM05D003214 ORTHO05D003503 1.6e-18 99.4 129 45.0
FAN20G0010 Fragaria x ananassa HOM05D003214 ORTHO05D001586 7.8e-18 97.1 71 63.4
FAN25G3698 Fragaria x ananassa HOM05D003214 ORTHO05D001586 7.3e-16 90.5 68 64.7
Gorai.011G120400 Gossypium raimondii HOM05D003214 ORTHO05D023725 1.7e-09 69.3 55 61.8
Gohir.D05G317050 Gossypium hirsutum HOM05D003214 ORTHO05D023725 4.7e-07 61.2 45 62.2


User provided reference genes

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