Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 0.0e+00 1273.8 655 100.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 6.0e-291 1003.8 657 78.8
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.1e-289 999.6 656 77.7
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.4e-284 981.9 656 77.4
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 7.1e-284 980.3 658 76.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.2e-283 979.5 659 75.6
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.6e-283 979.2 662 76.4
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.3e-281 971.5 657 74.7
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.5e-278 962.6 659 74.7
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 2.2e-277 958.7 657 75.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.9e-277 958.4 657 74.9
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-276 956.4 654 74.5
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 3.2e-276 954.9 657 75.3
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 5.5e-276 954.1 659 73.9
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.8e-274 949.1 646 75.1
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.8e-274 949.1 663 74.5
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 3.3e-273 944.9 657 73.2
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 3.3e-273 944.9 657 73.2
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 9.6e-273 943.3 659 73.4
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 5.3e-271 937.6 656 74.2
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 5.3e-271 937.6 661 74.1
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 6.9e-271 937.2 659 72.4
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 6.9e-271 937.2 656 74.5
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 2.6e-270 935.3 656 73.2
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 4.5e-270 934.5 658 72.0
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.8e-270 934.1 656 72.6
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.7e-269 932.6 653 72.4
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 3.8e-269 931.4 661 71.4
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 5.0e-269 931.0 661 71.0
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 5.0e-269 931.0 654 72.3
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 6.5e-269 930.6 659 71.2
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 3.2e-268 928.3 659 71.6
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 4.2e-268 927.9 658 72.0
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 7.1e-268 927.2 659 71.6
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 7.1e-268 927.2 659 72.5
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.1e-267 925.6 660 71.4
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 2.1e-267 925.6 655 74.0
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.3e-266 922.2 659 71.9
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 2.3e-266 922.2 652 71.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 3.9e-266 921.4 662 71.5
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.9e-265 919.1 659 71.2
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.5e-265 918.7 645 73.6
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.2e-264 915.6 661 71.1
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 2.8e-264 915.2 655 72.4
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 4.8e-264 914.4 658 71.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.4e-263 912.9 654 71.6
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.8e-263 912.5 657 72.6
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.8e-263 912.5 661 70.7
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.8e-263 912.5 661 71.1
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.8e-263 912.5 657 72.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.8e-263 912.5 655 71.8
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.5e-262 909.4 652 71.5
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 5.9e-262 907.5 692 68.5
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 5.0e-261 904.4 654 71.1
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 6.5e-261 904.0 659 70.3
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 3.2e-260 901.7 656 70.3
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 9.4e-260 900.2 657 71.1
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.2e-259 899.8 652 71.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 5.1e-258 894.4 663 70.1
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 6.7e-258 894.0 658 70.1
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 6.7e-258 894.0 665 69.6
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 3.1e-255 885.2 657 68.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 6.5e-253 877.5 660 69.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 4.2e-252 874.8 662 67.8
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.2e-251 873.2 697 66.7
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.2e-251 873.2 690 67.4
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.1e-251 872.5 697 66.7
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.9e-250 868.2 658 68.4
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.5e-249 866.3 585 75.4
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 2.4e-247 859.0 610 72.8
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.1e-247 858.6 661 67.5
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 2.6e-246 855.5 658 70.7
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 5.9e-246 854.4 645 68.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.2e-245 852.4 645 69.6
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.8e-245 851.7 645 68.5
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.2e-243 846.7 604 73.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 2.0e-241 839.3 662 64.8
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 4.4e-241 838.2 659 66.6
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 5.0e-237 824.7 662 66.5
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 8.5e-237 823.9 623 69.3
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.0e-234 817.0 727 62.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.2e-232 809.3 584 72.1
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 8.3e-232 807.4 868 53.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.5e-228 794.7 593 68.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.4e-223 779.2 654 64.4
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.7e-213 746.5 663 60.8
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.1e-210 735.7 688 59.9
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.2e-209 733.8 685 56.8
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.0e-201 706.4 658 57.4
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.6e-196 688.3 476 74.4
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.3e-194 682.9 848 48.6
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 6.0e-190 668.3 510 67.6
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.0e-189 667.5 574 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 6.8e-186 654.8 666 54.5
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.7e-181 640.2 476 69.3
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 6.4e-168 595.1 493 64.9
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.0e-165 587.8 569 55.9
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 6.2e-163 578.6 605 54.2
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.9e-141 506.1 438 60.7
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.2e-139 500.4 431 61.7
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 4.7e-110 402.9 472 48.1
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-103 380.9 347 58.2
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.1e-82 310.1 238 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.6e-81 306.6 411 43.3
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 7.8e-81 305.8 201 78.6
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.0e-80 303.9 205 76.6
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.9e-79 301.2 435 43.4
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.1e-69 268.9 181 72.9
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.3e-64 251.9 285 52.6
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.4e-61 241.9 409 38.9
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.5e-60 238.4 249 57.4
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.6e-60 237.7 170 69.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.6e-49 200.3 137 72.3
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-41 174.9 457 31.3
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.3e-40 171.4 143 62.9
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 3.3e-39 167.5 167 57.5
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 4.5e-36 157.1 97 76.3
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.7e-35 155.2 138 60.9
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-34 152.5 94 78.7
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.2e-33 149.1 92 79.3
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.5e-31 142.1 88 76.1
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 3.3e-31 141.0 82 82.9
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 9.7e-31 139.4 79 86.1
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.9e-28 130.2 92 69.6
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.7e-27 128.6 96 64.6
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 2.9e-27 127.9 90 73.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 3.0e-24 117.9 98 65.3
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 3.9e-24 117.5 84 70.2
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.9e-24 117.5 153 43.1
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 8.8e-24 116.3 148 52.7
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 1.5e-23 115.5 163 42.9
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.1e-21 109.4 97 62.9
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 3.8e-19 100.9 55 90.9
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 6.5e-19 100.1 65 70.8
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.6e-17 94.4 174 36.8
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.9e-16 90.9 67 65.7
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 9.7e-15 86.3 60 70.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 9.7e-15 86.3 60 70.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 4.8e-14 84.0 61 72.1
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 7.0e-13 80.1 60 65.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-13 79.7 51 70.6
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 3.2e-10 71.2 92 47.8
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.5e-07 62.4 65 43.1
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 3.3e-07 61.2 54 64.8


User provided reference genes

Program Settings