Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1481.5 772 100.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1191.8 771 79.8
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1185.2 788 77.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1182.2 771 77.8
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1180.6 781 77.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1164.1 760 77.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1156.7 771 76.3
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1153.7 775 76.5
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1153.3 773 76.7
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1150.2 777 76.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 743 77.7
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 778 74.7
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1142.1 772 75.9
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1141.3 730 80.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 737 78.7
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1140.6 772 75.9
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1139.4 728 78.7
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 763 76.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1137.9 764 76.0
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1137.1 761 76.2
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1135.2 728 78.7
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1131.3 781 75.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1130.5 781 74.4
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1125.2 742 77.6
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1124.0 728 78.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1121.7 742 77.6
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1121.3 779 74.5
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1120.9 772 74.1
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1117.8 742 77.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1114.4 767 74.4
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1113.6 765 74.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1110.9 761 75.2
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1110.1 720 77.8
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1107.4 753 75.4
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1107.0 735 76.2
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1106.3 716 79.1
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1105.9 778 74.6
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1105.5 735 76.6
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1105.5 764 75.5
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1104.7 775 73.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1104.4 812 70.7
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1103.6 720 77.1
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1100.5 714 78.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1100.1 729 76.4
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1097.8 774 73.0
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1095.5 697 79.5
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1092.8 751 74.2
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1091.3 777 72.2
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1090.5 703 78.4
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 752 74.5
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 752 74.5
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 758 73.0
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1080.5 750 74.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1078.5 731 74.1
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 758 73.2
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 758 73.2
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.6e-311 1072.4 746 74.1
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 3.7e-311 1071.2 742 74.8
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.4e-310 1069.3 795 71.1
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.0e-309 1065.4 735 74.4
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 7.5e-309 1063.5 761 72.0
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 2.2e-308 1062.0 771 69.8
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 4.9e-308 1060.8 763 72.5
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 795 71.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 807 69.0
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.1e-306 1055.4 772 71.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 3.5e-306 1054.7 748 73.5
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 3.9e-305 1051.2 773 69.9
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 5.1e-305 1050.8 749 72.8
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 6.6e-305 1050.4 720 74.9
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.1e-304 1049.7 839 66.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 726 72.9
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 8.1e-303 1043.5 724 73.3
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.7e-300 1035.8 777 69.1
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 779 68.7
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.5e-298 1028.1 737 71.1
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 6.0e-298 1027.3 647 79.9
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 781 68.8
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 730 71.4
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 8.6e-297 1023.5 778 68.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 728 71.4
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 9.6e-296 1020.0 725 71.6
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.2e-295 1019.6 782 68.0
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.6e-295 1018.1 718 73.7
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 781 68.1
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 4.0e-294 1014.6 745 69.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 5.2e-294 1014.2 782 67.8
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 6.8e-294 1013.8 722 71.3
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.2e-293 1013.1 720 71.4
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 3.4e-293 1011.5 722 71.2
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.4e-293 1011.1 720 71.1
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 697 74.3
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 2.3e-289 998.8 681 75.2
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.9e-289 998.0 755 68.7
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.3e-284 983.0 759 68.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.1e-283 979.9 732 70.8
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.7e-239 832.0 617 71.0
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.7e-237 824.3 529 75.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 6.5e-236 821.2 541 73.6
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.2e-234 817.0 721 60.9
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 9.1e-230 800.8 747 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.6e-229 800.0 718 56.7
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.5e-229 798.9 726 56.5
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.2e-226 790.4 728 58.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.3e-215 751.1 541 65.4
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 5.2e-209 731.9 531 65.0
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 4.1e-206 722.2 529 65.4
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.8e-192 675.2 518 63.1
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 8.1e-186 654.8 414 76.8
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.9e-171 607.1 403 75.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.7e-164 583.9 414 66.9
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 6.0e-149 532.3 343 79.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.3e-132 477.2 269 84.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.2e-99 368.6 689 35.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 2.7e-96 357.5 491 41.8
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.0e-92 345.5 361 54.6
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.8e-92 344.7 264 62.5
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.7e-88 330.9 625 39.8
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 5.0e-87 326.6 275 65.5
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.0e-71 274.2 583 32.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 7.6e-67 259.6 351 47.0
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.6e-37 162.2 99 76.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.6e-35 154.8 83 86.7
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.5e-33 148.3 100 72.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.1e-32 145.2 130 58.5
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 6.3e-29 133.7 120 61.7
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.1e-20 106.3 128 46.9
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.7e-18 99.0 54 83.3
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 4.2e-17 94.4 103 48.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 6.1e-16 90.5 138 39.1
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 6.9e-12 77.0 74 56.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.2e-10 72.0 81 55.6
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.7e-08 65.1 374 24.1
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.7e-08 65.1 80 45.0
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.6e-06 58.5 82 41.5
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 9.7e-06 56.6 65 50.8


User provided reference genes

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