Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000244 Daucus carota HOM05D003089 ORTHO05D003544 1.9e-270 935.3 486 100.0
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 4.3e-262 907.5 471 100.0
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 9.0e-159 564.3 479 64.9
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 2.5e-156 556.2 493 59.6
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 1.2e-155 553.9 494 61.1
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 2.7e-155 552.7 494 60.9
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 3.3e-153 545.8 486 61.5
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 3.7e-152 542.3 494 58.5
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 2.0e-150 536.6 482 61.0
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 6.5e-149 531.6 501 58.9
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 2.5e-148 529.6 498 57.6
TAR369G0041 Trochodendron aralioides HOM05D003089 ORTHO05D003544 5.5e-148 528.5 503 57.3
Nn1g03865 Nelumbo nucifera HOM05D003089 ORTHO05D003544 7.2e-148 528.1 477 58.7
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 9.4e-148 527.7 492 57.3
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 2.7e-147 526.2 475 62.1
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 1.0e-146 524.2 498 57.0
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 2.0e-145 520.0 498 56.4
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 4.4e-145 518.8 481 58.4
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 1.1e-143 514.2 494 56.1
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 5.3e-143 511.9 478 57.7
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.0e-142 510.0 476 59.0
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 7.7e-142 508.1 495 54.9
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 7.7e-142 508.1 495 54.9
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.0e-141 507.7 476 58.6
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 3.8e-141 505.8 484 56.8
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 6.5e-141 505.0 504 56.5
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 7.2e-140 501.5 501 55.1
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 9.4e-140 501.1 483 56.1
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 1.2e-139 500.7 486 57.8
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 1.6e-139 500.4 487 56.1
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 1.6e-139 500.4 487 56.1
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 2.7e-139 499.6 505 54.9
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 3.9e-138 495.7 502 55.4
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 8.8e-138 494.6 483 55.7
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 8.8e-138 494.6 481 56.3
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 3.3e-137 492.7 503 53.3
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 3.3e-137 492.7 483 57.3
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 2.2e-136 490.0 506 54.5
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 2.8e-136 489.6 503 52.7
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.1e-135 487.6 494 53.0
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.1e-135 487.6 501 51.5
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 2.4e-135 486.5 494 52.8
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 4.1e-135 485.7 501 53.7
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 2.0e-134 483.4 504 53.8
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 2.0e-134 483.4 494 53.2
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 2.0e-134 483.4 505 54.3
vmacro02129 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 2.0e-134 483.4 453 59.8
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 4.5e-134 482.3 494 53.0
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 4.5e-134 482.3 476 55.3
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 7.7e-134 481.5 476 55.0
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 7.7e-134 481.5 472 56.4
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 1.0e-133 481.1 503 52.9
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 1.3e-133 480.7 476 55.0
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 1.7e-133 480.3 474 56.3
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 2.2e-133 479.9 511 51.7
Solyc11g043130.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 2.9e-133 479.6 472 56.1
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 5.0e-133 478.8 502 52.2
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 8.5e-133 478.0 510 52.5
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 1.5e-132 477.2 505 53.3
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 5.5e-132 475.3 493 52.9
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 7.2e-132 474.9 501 52.7
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 7.2e-132 474.9 475 56.0
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 9.4e-132 474.6 503 53.1
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 1.6e-131 473.8 471 54.6
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 1.6e-131 473.8 500 53.4
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 2.1e-131 473.4 501 52.9
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 3.6e-131 472.6 478 52.9
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 4.7e-131 472.2 501 53.5
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 4.7e-131 472.2 499 53.5
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 4.7e-131 472.2 501 53.1
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 8.0e-131 471.5 488 52.9
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 1.8e-130 470.3 487 55.2
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 2.3e-130 469.9 497 53.3
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 2.3e-130 469.9 479 53.4
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 2.0e-129 466.8 504 51.4
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 2.0e-129 466.8 487 54.6
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 2.6e-129 466.5 477 53.5
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 2.6e-129 466.5 495 52.9
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 2.6e-129 466.5 472 55.7
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 4.4e-129 465.7 510 52.5
Lalb_Chr00c44g0412571 Lupinus albus HOM05D003089 ORTHO05D003544 4.4e-129 465.7 497 53.9
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 4.4e-129 465.7 497 53.9
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 5.7e-129 465.3 477 53.2
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 5.7e-129 465.3 501 51.5
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 7.5e-129 464.9 493 53.8
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 7.5e-129 464.9 495 52.7
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 1.3e-128 464.2 494 53.4
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 1.3e-128 464.2 496 54.6
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 2.2e-128 463.4 473 54.1
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 2.2e-128 463.4 500 51.4
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 3.7e-128 462.6 489 52.4
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 8.2e-128 461.5 495 53.1
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.4e-127 460.7 474 53.4
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 1.4e-127 460.7 474 53.4
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 2.4e-127 459.9 500 51.4
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 2.4e-127 459.9 474 54.2
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 3.1e-127 459.5 491 52.1
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 4.1e-127 459.1 494 53.0
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 4.1e-127 459.1 474 53.4
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 4.1e-127 459.1 489 52.1
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 4.1e-127 459.1 507 51.1
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 5.3e-127 458.8 501 51.5
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 2.7e-126 456.4 503 52.1
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 1.0e-125 454.5 531 50.1
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 1.3e-125 454.1 495 52.5
CsaV3_2G014560 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.7e-125 453.8 487 52.0
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 2.2e-125 453.4 471 52.2
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 3.8e-125 452.6 500 52.0
MELO3C020989.2 Cucumis melo HOM05D003089 ORTHO05D003544 3.8e-125 452.6 487 51.7
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.1e-124 451.1 495 52.9
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 2.5e-124 449.9 494 52.6
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 2.1e-123 446.8 483 52.4
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 2.1e-123 446.8 483 52.4
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 2.3e-122 443.4 480 51.7
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 1.7e-120 437.2 504 51.4
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 3.7e-120 436.0 475 51.2
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 4.2e-116 422.5 493 51.5
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 2.8e-115 419.9 490 50.0
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 6.6e-109 398.7 475 50.5
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 2.5e-108 396.7 562 45.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 5.6e-108 395.6 479 48.9
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 1.4e-106 391.0 506 45.1
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.6e-105 386.7 474 47.9
Eucgr.G00449 Eucalyptus grandis HOM05D003089 ORTHO05D003544 3.2e-103 379.8 477 48.4
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 5.9e-102 375.6 499 42.9
Peaxi162Scf00242g00019 Petunia axillaris HOM05D003089 ORTHO05D003544 2.0e-94 350.5 475 44.6
Cpa.g.sc62.126 Carica papaya HOM05D003089 ORTHO05D003544 1.7e-93 347.4 373 57.1
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 2.5e-92 343.6 471 42.5
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 8.3e-88 328.6 475 43.4
SEGI_36294 Sequoiadendron giganteum HOM05D003089 ORTHO05D003544 4.1e-87 326.2 532 40.2
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 5.4e-87 325.9 471 41.8
Atru.chr5.2984 Acer truncatum HOM05D003089 ORTHO05D003544 7.8e-86 322.0 372 51.3
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 2.3e-85 320.5 473 41.2
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 2.3e-85 320.5 473 41.2
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 2.3e-85 320.5 473 41.2
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 8.6e-85 318.5 477 42.8
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 4.4e-81 306.2 470 40.6
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 9.9e-81 305.1 480 39.8
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 1.9e-79 300.8 471 39.7
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.0e-77 295.0 473 38.9
AL307U10030 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.3e-77 293.9 474 39.5
CDE04G2374 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 3.9e-69 266.5 241 61.0
Zm00001eb216400 Zea mays HOM05D003089 ORTHO05D003544 3.1e-66 256.9 479 38.8
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 7.6e-65 252.3 280 51.4
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 1.3e-56 224.9 170 66.5
Mapoly0001s0228 Marchantia polymorpha HOM05D003089 ORTHO05D003544 1.4e-55 221.5 535 31.0
Mapoly0001s0451 Marchantia polymorpha HOM05D003089 ORTHO05D003544 1.9e-52 211.1 535 30.5
Pp3c22_1940 Physcomitrium patens HOM05D003089 ORTHO05D003544 1.7e-48 198.0 559 27.2
AagrBONN_evm.TU.Sc2ySwM_344.1888 Anthoceros agrestis HOM05D003089 ORTHO05D003544 1.1e-47 195.3 556 29.1
FAN27G0914 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.7e-40 171.4 123 64.2
Pp3c5_19540 Physcomitrium patens HOM05D003089 ORTHO05D003544 1.4e-39 168.3 530 27.4
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 8.8e-37 159.1 115 64.3
CDE07G1820 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 2.5e-36 157.5 348 35.6
CDE07G0793 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 5.7e-36 156.4 294 37.1
SMO116G0267 Selaginella moellendorffii HOM05D003089 ORTHO05D003544 1.7e-32 144.8 230 35.2
CDE04G1756 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 7.9e-30 136.0 123 53.7
AT1G51040 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 4.7e-22 110.2 108 45.4
CBR_g31025 Chara braunii HOM05D003089 ORTHO05D003544 3.1e-18 97.4 535 26.0
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 6.1e-06 56.6 48 58.3


User provided reference genes

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