Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.1e-188 662.1 328 100.0
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.1e-188 662.1 328 100.0
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 1.9e-184 649.0 328 97.6
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 1.8e-182 642.5 328 96.3
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 1.9e-168 595.9 328 89.9
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 2.4e-155 552.4 328 79.0
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 5.3e-155 551.2 326 78.5
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 5.9e-154 547.7 326 78.2
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 5.0e-153 544.7 326 78.2
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.9e-152 542.7 326 76.4
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.9e-152 542.7 326 76.4
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 3.2e-152 542.0 326 78.2
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 2.1e-151 539.3 326 78.2
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 2.7e-151 538.9 326 76.4
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 4.7e-151 538.1 326 77.6
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 6.1e-151 537.7 326 79.1
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 2.3e-150 535.8 327 78.6
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 1.2e-149 533.5 329 77.5
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 2.0e-149 532.7 326 78.5
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 2.6e-149 532.3 324 78.4
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 3.4e-149 531.9 327 77.7
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 4.4e-149 531.6 324 77.8
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 4.4e-149 531.6 326 76.7
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 7.5e-149 530.8 327 78.0
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 1.7e-148 529.6 326 76.4
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 4.8e-148 528.1 326 76.4
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 1.1e-147 526.9 328 75.6
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.4e-147 526.6 328 77.4
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 4.1e-147 525.0 330 76.4
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 7.0e-147 524.2 323 76.2
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 9.1e-147 523.9 323 76.5
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 1.2e-146 523.5 324 76.5
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-146 523.5 327 76.8
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 3.5e-146 521.9 324 77.5
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 4.5e-146 521.5 329 76.0
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 4.5e-146 521.5 329 76.0
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 5.9e-146 521.2 328 74.4
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 7.7e-146 520.8 326 75.5
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.3e-145 520.0 326 77.0
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 1.3e-145 520.0 328 74.7
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 2.9e-145 518.8 323 75.9
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 6.5e-145 517.7 330 75.2
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 6.5e-145 517.7 316 78.5
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 8.5e-145 517.3 327 73.7
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 1.1e-144 516.9 329 74.2
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.5e-144 516.5 315 77.8
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 1.9e-144 516.2 328 74.7
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 1.9e-144 516.2 329 75.1
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 2.5e-144 515.8 326 75.2
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 2.5e-144 515.8 326 75.2
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 3.2e-144 515.4 315 77.5
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 3.2e-144 515.4 327 76.5
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 1.2e-143 513.5 327 75.5
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 1.2e-143 513.5 326 74.2
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 1.6e-143 513.1 323 74.9
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.6e-143 513.1 327 75.8
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 1.6e-143 513.1 319 75.2
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 1.6e-143 513.1 329 74.2
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 2.7e-143 512.3 327 75.8
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 1.4e-142 510.0 327 75.5
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 1.8e-142 509.6 327 73.7
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.3e-142 509.2 327 74.6
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 5.2e-142 508.1 327 72.8
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 8.8e-142 507.3 327 74.6
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 1.5e-141 506.5 327 74.3
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 2.0e-141 506.1 327 73.7
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 3.4e-141 505.4 327 73.1
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 4.4e-141 505.0 327 74.3
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 4.4e-141 505.0 327 74.0
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 7.5e-141 504.2 327 74.0
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 7.5e-141 504.2 324 71.9
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 7.5e-141 504.2 327 72.5
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.3e-140 503.4 327 72.8
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 2.8e-140 502.3 327 73.7
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 3.7e-140 501.9 317 74.1
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.1e-139 500.4 330 73.3
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.1e-139 500.4 330 73.3
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 1.1e-139 500.4 327 72.2
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 4.1e-139 498.4 329 71.4
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 4.1e-139 498.4 327 72.8
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 4.1e-139 498.4 328 73.2
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 5.4e-139 498.0 327 72.5
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 5.4e-139 498.0 327 72.5
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.6e-138 496.5 329 71.7
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 4.5e-138 495.0 326 73.6
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 3.8e-137 491.9 316 75.3
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 6.6e-137 491.1 325 72.0
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 8.6e-137 490.7 319 72.4
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 4.3e-136 488.4 327 71.3
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 5.6e-136 488.0 324 72.5
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 7.3e-136 487.6 327 70.9
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 2.1e-135 486.1 319 71.5
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 2.1e-135 486.1 319 72.1
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 2.8e-135 485.7 326 70.9
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.8e-135 485.7 327 70.9
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 6.1e-135 484.6 329 70.2
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 8.0e-135 484.2 325 70.8
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 8.0e-135 484.2 325 71.1
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.8e-134 483.0 324 70.1
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 4.0e-134 481.9 319 70.5
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 6.8e-134 481.1 328 70.7
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 2.9e-132 475.7 326 69.9
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 2.9e-132 475.7 326 69.9
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 3.7e-132 475.3 324 70.7
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 6.4e-132 474.6 336 67.9
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.6e-130 469.9 330 70.0
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 6.6e-129 464.5 328 66.8
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 8.6e-129 464.2 319 69.3
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.1e-128 463.8 319 69.0
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.1e-128 463.8 318 69.2
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 5.6e-128 461.5 319 69.0
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 2.1e-127 459.5 327 68.8
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 3.6e-127 458.8 328 65.9
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 6.2e-127 458.0 329 68.4
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 6.2e-127 458.0 328 66.2
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 8.0e-127 457.6 326 66.9
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 6.4e-124 448.0 324 68.2
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 1.9e-123 446.4 329 66.3
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 7.0e-123 444.5 327 67.3
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 7.8e-122 441.0 309 66.7
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 1.9e-115 419.9 324 62.7
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 4.1e-115 418.7 324 64.8
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 9.2e-115 417.5 327 63.3
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 4.3e-112 408.7 340 59.1
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 5.6e-112 408.3 322 60.6
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 1.6e-111 406.8 325 64.6
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 2.6e-109 399.4 324 61.4
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 9.9e-109 397.5 305 65.9
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 1.7e-105 386.7 257 74.3
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 7.1e-99 364.8 338 55.3
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 2.1e-98 363.2 312 58.7
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 1.0e-97 360.9 308 60.1
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.7e-97 360.1 321 57.0
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 2.6e-93 346.3 259 66.4
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 1.3e-89 334.0 324 51.2
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 2.4e-86 323.2 230 68.7
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 1.0e-81 307.8 347 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 6.2e-79 298.5 328 47.6
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 7.6e-77 291.6 342 47.1
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.4e-75 287.3 325 49.5
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 7.1e-75 285.0 213 63.4
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 3.3e-72 276.2 219 62.6
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 7.4e-72 275.0 355 43.7
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 3.1e-70 269.6 220 61.4
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 1.9e-64 250.4 307 43.3
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 2.4e-62 243.4 346 39.0
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 4.1e-62 242.7 305 44.9
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 3.8e-60 236.1 194 62.9
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 2.3e-57 226.9 191 58.6
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 4.4e-56 222.6 155 69.0
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 1.5e-53 214.2 246 48.8
Zm00001eb159690 Zea mays HOM05D003747 ORTHO05D051588 1.1e-48 198.0 261 45.2
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.3e-44 184.5 243 46.1
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 2.3e-41 173.7 155 56.1
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 2.0e-40 170.6 103 71.8
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 5.7e-40 169.1 243 43.6
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 2.2e-36 157.1 95 74.7
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 1.1e-35 154.8 111 63.1
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 2.7e-29 133.7 92 65.2
BcaC05g24429 Brassica carinata HOM05D003747 ORTHO05D016772 5.9e-29 132.5 73 78.1
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 8.0e-18 95.5 116 48.3
BolC5t29114H Brassica oleracea HOM05D003747 ORTHO05D016772 1.4e-09 68.2 73 49.3


User provided reference genes

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