Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.0e-179 633.6 416 100.0
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 4.1e-168 595.1 437 92.7
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 2.8e-161 572.4 317 92.4
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 5.9e-159 564.7 317 90.9
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 8.6e-150 534.3 323 85.8
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 1.2e-148 530.4 317 83.6
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 1.2e-148 530.4 317 83.6
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 2.1e-148 529.6 329 81.5
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 1.2e-146 523.9 317 83.3
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 7.5e-146 521.2 317 83.6
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 7.5e-146 521.2 318 81.8
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 1.3e-145 520.4 317 83.0
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 1.7e-145 520.0 317 83.3
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 8.3e-145 517.7 328 79.6
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.8e-144 516.5 327 80.4
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 3.2e-144 515.8 317 82.6
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 4.1e-144 515.4 317 81.4
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 4.1e-144 515.4 317 82.0
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 9.2e-144 514.2 328 79.3
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.2e-143 513.8 317 80.8
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 1.2e-143 513.8 317 82.3
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 5.9e-143 511.5 321 81.0
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 5.9e-143 511.5 317 82.0
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 7.8e-143 511.1 317 82.3
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 1.0e-142 510.8 317 81.7
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.0e-142 510.8 318 81.8
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.0e-142 510.8 320 81.2
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 1.3e-142 510.4 318 81.8
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-142 509.6 320 80.9
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 3.0e-142 509.2 319 80.6
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 1.5e-141 506.9 317 81.4
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.9e-141 506.5 317 80.4
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.3e-141 505.8 320 80.6
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 7.3e-141 504.6 322 80.1
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 9.5e-141 504.2 329 78.4
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 9.5e-141 504.2 326 79.1
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 2.8e-140 502.7 317 79.8
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 4.7e-140 501.9 318 79.6
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 4.7e-140 501.9 321 79.4
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 8.0e-140 501.1 317 79.5
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 8.0e-140 501.1 320 78.8
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 8.0e-140 501.1 328 79.6
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.0e-139 500.7 317 79.5
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.8e-139 500.0 331 77.3
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 1.8e-139 500.0 331 77.3
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 2.3e-139 499.6 322 79.8
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 2.3e-139 499.6 319 80.9
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 2.3e-139 499.6 319 79.3
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 4.0e-139 498.8 317 80.4
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 6.8e-139 498.0 321 78.5
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 6.8e-139 498.0 321 78.5
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 6.8e-139 498.0 329 77.2
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 8.9e-139 497.7 320 78.8
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.2e-138 497.3 320 80.3
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 2.6e-138 496.1 321 76.6
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.4e-138 495.7 318 79.9
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 3.4e-138 495.7 324 78.4
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 4.4e-138 495.4 319 80.3
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 5.8e-138 495.0 324 76.9
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 5.8e-138 495.0 319 79.9
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 9.8e-138 494.2 324 79.0
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 9.8e-138 494.2 318 80.2
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 9.8e-138 494.2 321 77.6
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.3e-137 493.8 322 77.6
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.7e-137 493.4 317 78.5
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 2.2e-137 493.0 319 77.7
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 2.9e-137 492.7 317 78.9
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.9e-137 492.7 332 76.8
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.7e-137 492.3 317 78.5
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.7e-137 492.3 317 78.2
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 6.4e-137 491.5 324 78.7
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 3.2e-136 489.2 329 74.8
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 3.2e-136 489.2 323 77.4
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 3.2e-136 489.2 329 76.0
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 5.4e-136 488.4 321 77.6
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 7.0e-136 488.0 321 76.6
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 7.0e-136 488.0 328 76.2
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 9.2e-136 487.6 323 77.1
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 9.2e-136 487.6 320 80.0
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 1.2e-135 487.3 320 79.4
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-135 486.9 322 77.3
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-135 486.9 322 77.3
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 1.7e-134 483.4 327 74.3
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 2.3e-134 483.0 324 77.2
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 2.3e-134 483.0 319 75.9
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 3.9e-134 482.3 329 75.1
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 5.0e-134 481.9 320 76.2
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 6.6e-134 481.5 320 76.2
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 1.5e-133 480.3 331 74.0
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 1.5e-133 480.3 320 76.9
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 1.5e-133 480.3 320 76.9
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 1.5e-133 480.3 319 79.3
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 5.6e-133 478.4 320 75.9
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 7.3e-133 478.0 322 75.5
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 9.5e-133 477.6 327 76.1
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 2.8e-132 476.1 323 75.9
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 2.8e-132 476.1 323 75.9
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 6.2e-132 474.9 320 75.3
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 1.4e-131 473.8 320 75.0
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 2.3e-131 473.0 328 76.2
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 2.3e-131 473.0 320 74.4
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 4.0e-131 472.2 322 74.8
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 1.2e-130 470.7 322 75.2
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 2.0e-130 469.9 324 75.6
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 2.0e-130 469.9 324 75.6
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 2.6e-130 469.5 333 72.1
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 3.4e-130 469.2 321 75.1
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.3e-129 467.2 331 73.4
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 8.3e-129 464.5 323 74.3
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 3.2e-128 462.6 328 72.3
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.6e-127 460.3 333 74.2
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 2.1e-127 459.9 326 71.5
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 6.0e-127 458.4 322 73.0
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 2.3e-126 456.4 338 69.5
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 3.3e-125 452.6 325 72.0
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.1e-123 446.0 324 73.1
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 6.8e-123 444.9 337 70.0
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 8.4e-121 438.0 350 66.6
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 1.1e-120 437.6 325 72.0
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 3.2e-120 436.0 329 70.2
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 1.2e-119 434.1 322 69.6
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 2.1e-119 433.3 352 65.9
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.4e-115 420.6 328 67.4
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 3.1e-115 419.5 331 65.9
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 3.1e-115 419.5 271 79.0
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.5e-114 417.2 328 66.8
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 3.4e-114 416.0 334 65.0
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.3e-108 397.5 330 64.2
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 1.4e-107 394.0 320 64.7
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 3.2e-104 382.9 322 64.6
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 5.4e-104 382.1 364 58.2
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 2.3e-102 376.7 358 56.7
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 3.0e-102 376.3 348 58.9
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 3.0e-102 376.3 355 56.6
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 5.3e-99 365.5 343 58.0
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 1.2e-95 354.4 362 53.3
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 1.2e-87 327.8 349 52.1
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 4.6e-87 325.9 328 54.3
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 3.3e-85 319.7 331 54.1
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 2.4e-75 287.0 328 52.1
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 1.0e-73 281.6 331 49.5
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 1.0e-73 281.6 361 48.5
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 1.4e-70 271.2 347 45.5
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 3.7e-68 263.1 358 42.7
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 6.9e-67 258.8 333 47.4
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 3.4e-66 256.5 318 46.2
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 9.4e-64 248.4 159 79.2
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.7e-63 246.1 156 80.1
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 4.7e-63 246.1 327 45.0
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-62 243.8 156 79.5
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 8.8e-62 241.9 330 43.3
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.3e-53 213.4 132 81.8
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 1.2e-47 194.9 402 35.1
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 1.5e-45 188.0 244 44.3
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.3e-36 158.3 164 56.1
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.3e-36 158.3 164 56.1
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.2e-27 127.1 71 88.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.5e-26 123.6 99 66.7
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.8e-26 122.5 99 66.7
Zm00001eb159680 Zea mays HOM05D003747 ORTHO05D029724 5.2e-22 109.8 221 30.8
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 2.9e-20 104.0 221 29.9
FAN12G1929 Fragaria x ananassa HOM05D003747 ORTHO05D029724 8.3e-20 102.4 66 78.8
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 4.6e-18 96.7 81 63.0
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 3.9e-17 93.6 67 64.2
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 5.0e-17 93.2 67 64.2
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 8.6e-17 92.4 64 65.6
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 1.2e-15 88.6 67 61.2
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 2.8e-15 87.4 88 54.5
Rhsim06G0014000 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.3e-09 68.6 46 69.6
Actinidia22493 Actinidia chinensis HOM05D003747 ORTHO05D053212 1.5e-08 65.1 107 42.1
ATR0030G011 Amborella trichopoda HOM05D003747 ORTHO05D066495 1.9e-08 64.7 53 56.6
Cpa.g.sc99.31 Carica papaya HOM05D003747 ORTHO05D005080 2.8e-07 60.8 66 48.5
Lj3A751T54 Lonicera japonica HOM05D000041 ORTHO05D000452 4.7e-07 60.1 79 40.5
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 6.2e-07 59.7 74 41.9
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-06 58.2 42 64.3


User provided reference genes

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