Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 5.4e-204 714.1 370 100.0
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 8.0e-200 700.3 362 100.0
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 7.6e-174 614.0 370 88.6
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 2.9e-141 505.8 365 73.4
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.3e-138 496.9 371 70.1
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.4e-130 470.3 367 69.5
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 5.0e-101 372.1 366 53.8
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.1e-95 352.4 370 51.4
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 2.0e-94 350.1 367 52.9
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 2.5e-92 343.2 365 50.1
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 1.8e-90 337.0 356 50.6
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 6.4e-88 328.6 404 45.5
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 6.4e-88 328.6 365 51.0
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 9.5e-84 314.7 367 46.3
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 9.5e-84 314.7 380 47.1
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 5.2e-82 308.9 373 45.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.3e-80 304.3 373 46.1
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.7e-80 303.9 366 47.0
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 2.9e-80 303.1 359 47.4
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 8.3e-80 301.6 367 47.7
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 7.0e-79 298.5 370 44.1
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.2e-78 297.7 343 46.1
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 4.6e-78 295.8 379 44.9
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 3.9e-77 292.7 361 46.0
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 5.0e-77 292.4 342 45.6
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.1e-76 291.2 378 44.7
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 4.3e-76 289.3 359 48.7
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 5.6e-76 288.9 314 51.3
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 7.3e-76 288.5 354 44.9
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.2e-75 287.7 378 43.9
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.1e-75 287.0 294 50.0
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 2.1e-75 287.0 284 50.4
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 2.6e-73 280.0 349 44.7
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.6e-73 280.0 363 46.0
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 1.3e-72 277.7 302 48.7
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 3.7e-72 276.2 369 46.3
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.2e-70 271.2 256 52.0
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 2.1e-70 270.4 277 52.0
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 3.5e-70 269.6 377 42.4
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 1.7e-69 267.3 364 41.2
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 3.0e-69 266.5 324 43.5
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 6.6e-69 265.4 328 43.0
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 5.6e-68 262.3 363 41.0
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.6e-67 260.8 367 42.2
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 3.6e-67 259.6 347 42.9
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 6.2e-67 258.8 294 44.2
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 2.3e-66 256.9 338 39.9
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 8.9e-66 255.0 326 42.3
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 1.5e-65 254.2 352 40.9
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 2.2e-64 250.4 286 46.2
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 3.7e-64 249.6 405 38.0
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 6.4e-64 248.8 272 44.9
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 8.4e-64 248.4 249 45.8
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-63 247.7 306 43.5
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.9e-63 247.3 306 43.8
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.1e-63 246.1 306 43.1
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 4.1e-63 246.1 325 41.5
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 5.4e-63 245.7 322 41.3
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 5.4e-63 245.7 275 46.2
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 9.2e-63 245.0 302 45.7
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.2e-62 244.6 294 45.6
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.7e-62 243.4 364 40.7
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 3.5e-62 243.0 363 39.9
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 3.5e-62 243.0 249 45.0
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 3.5e-62 243.0 304 41.8
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 1.3e-61 241.1 340 40.9
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 3.9e-61 239.6 251 50.2
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.9e-61 239.6 251 50.2
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 3.9e-61 239.6 200 58.0
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 5.1e-61 239.2 306 43.1
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.5e-60 237.7 306 42.2
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 1.5e-60 237.7 270 41.5
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.9e-60 237.3 251 49.8
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 2.5e-60 236.9 319 40.4
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.2e-59 234.6 253 49.4
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 2.1e-59 233.8 249 49.0
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.8e-59 233.4 284 47.5
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.8e-59 233.4 305 44.3
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 4.7e-59 232.6 375 37.6
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 6.2e-59 232.3 284 47.2
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 8.1e-59 231.9 253 44.3
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-58 231.5 256 50.8
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.1e-58 231.5 326 40.2
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.4e-58 231.1 358 40.8
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.8e-58 230.7 251 49.4
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 8.9e-58 228.4 337 38.3
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.2e-57 228.0 278 47.8
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 1.5e-57 227.6 252 47.6
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 2.0e-57 227.3 256 47.3
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 3.4e-57 226.5 365 38.6
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 2.9e-56 223.4 339 38.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 1.1e-55 221.5 259 45.2
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-55 221.1 338 37.3
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 3.2e-55 219.9 343 36.7
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-54 218.0 334 37.1
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.6e-54 217.6 342 39.5
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.6e-54 217.6 257 45.1
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 2.1e-54 217.2 257 44.0
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 3.5e-54 216.5 323 38.1
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 3.5e-54 216.5 279 39.4
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 7.8e-54 215.3 246 43.9
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 7.8e-54 215.3 249 42.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 1.3e-53 214.5 342 39.8
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.3e-53 214.5 342 39.8
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 1.3e-53 214.5 330 39.1
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.3e-53 214.5 249 44.2
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-53 214.5 268 41.0
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.3e-53 213.8 265 43.4
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 2.3e-53 213.8 216 49.5
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.0e-53 213.4 259 42.5
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 1.1e-52 211.5 203 49.8
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.5e-52 211.1 251 43.8
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 5.6e-52 209.1 343 38.8
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 4.8e-51 206.1 292 39.4
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.4e-50 204.5 342 39.5
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.8e-50 204.1 265 42.3
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 3.1e-50 203.4 255 41.2
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 9.0e-50 201.8 304 35.9
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 1.5e-49 201.1 303 35.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 9.9e-49 198.4 233 42.1
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 9.9e-49 198.4 233 42.1
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 6.0e-46 189.1 207 48.8
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.0e-45 188.3 232 40.1
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.7e-45 187.6 298 36.9
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 3.0e-45 186.8 289 36.7
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 6.6e-45 185.7 166 54.2
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.6e-44 182.6 290 36.6
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 1.3e-43 181.4 250 39.6
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 8.1e-43 178.7 316 34.5
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 1.4e-42 177.9 212 45.3
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.3e-42 176.0 231 39.8
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.2e-41 174.9 223 39.9
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.6e-41 173.7 193 46.6
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 1.7e-40 171.0 331 33.8
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 4.6e-38 162.9 224 40.6
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 4.8e-35 152.9 242 36.4
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 3.8e-32 143.3 202 37.6
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-31 141.7 187 41.2
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 1.4e-31 141.4 187 40.6
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.2e-31 140.2 187 40.6
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 7.1e-31 139.0 120 57.5
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.5e-28 131.3 338 30.2
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 2.8e-27 127.1 215 33.0
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 8.2e-27 125.6 155 42.6
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 1.5e-25 121.3 256 30.9
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.4e-23 114.8 217 33.6
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 1.6e-22 111.3 189 38.6
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 2.1e-22 110.9 189 39.2
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.6e-22 109.8 189 38.6
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.0e-21 108.6 180 35.6
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.7e-20 102.1 200 36.0
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.8e-19 100.5 200 35.5
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.4e-18 98.2 171 33.9
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 3.1e-18 97.1 171 37.4
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 4.1e-18 96.7 138 43.5
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 9.4e-15 85.5 102 41.2
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 2.0e-12 77.8 107 37.4
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 8.2e-11 72.4 74 52.7
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 1.4e-10 71.6 87 40.2
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.8e-10 71.2 88 37.5
Sc19g0005950 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.1e-07 62.0 62 48.4
BcaB05g23738 Brassica carinata HOM05D003177 ORTHO05D003481 2.7e-06 57.4 63 42.9


User provided reference genes

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