Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 1.2e-255 885.9 434 100.0
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 4.3e-221 771.2 434 85.7
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 9.8e-189 663.7 384 85.2
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 2.3e-166 589.3 436 73.2
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 3.1e-158 562.4 435 62.3
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.8e-150 536.6 433 59.8
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 5.8e-149 531.6 424 61.1
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.7e-148 530.0 427 60.7
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 3.0e-145 519.2 424 59.7
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 3.9e-145 518.8 436 59.6
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 1.9e-144 516.5 432 58.1
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 2.5e-144 516.2 427 58.1
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 7.3e-144 514.6 425 58.8
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 2.1e-143 513.1 406 61.3
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.8e-143 511.9 437 58.1
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.2e-143 511.5 439 57.9
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 6.2e-143 511.5 436 58.0
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.4e-142 509.6 431 59.9
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.4e-142 509.6 430 56.3
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 6.9e-142 508.1 430 56.7
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 9.0e-142 507.7 429 56.6
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 2.6e-141 506.1 423 58.9
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.4e-139 500.4 433 55.9
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 3.5e-138 495.7 430 56.3
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 8.7e-137 491.1 427 55.7
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.5e-136 490.3 429 56.2
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 2.5e-136 489.6 433 57.3
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.3e-135 487.3 434 56.7
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 6.2e-135 485.0 431 55.5
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 8.1e-135 484.6 432 58.3
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 5.3e-134 481.9 434 56.9
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 4.5e-133 478.8 411 59.1
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 4.5e-133 478.8 427 56.7
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 7.6e-133 478.0 409 56.0
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.3e-132 477.2 427 57.6
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 1.3e-132 477.2 449 54.3
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 2.2e-132 476.5 439 53.8
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 6.4e-132 474.9 434 55.5
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 8.4e-132 474.6 433 55.0
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 1.9e-131 473.4 429 54.8
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 1.9e-131 473.4 483 51.3
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 3.2e-131 472.6 424 55.2
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 5.4e-131 471.9 428 54.4
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 5.4e-131 471.9 429 55.0
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 2.1e-130 469.9 427 56.9
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 4.6e-130 468.8 428 54.0
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 7.9e-130 468.0 437 53.1
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 1.0e-129 467.6 428 53.7
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 1.0e-129 467.6 428 53.7
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 1.8e-129 466.8 437 53.1
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 8.7e-129 464.5 424 54.5
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 1.5e-128 463.8 418 54.3
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.5e-128 463.0 428 52.6
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 9.6e-128 461.1 427 52.7
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 4.8e-127 458.8 445 52.1
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 8.1e-127 458.0 409 56.2
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 5.3e-126 455.3 431 53.4
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 5.3e-126 455.3 429 52.7
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 1.2e-125 454.1 383 56.4
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 4.5e-125 452.2 442 51.1
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 4.6e-122 442.2 466 50.2
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 1.3e-121 440.7 438 51.8
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 1.1e-120 437.6 534 43.6
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 1.1e-120 437.6 425 49.6
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 1.1e-120 437.6 423 53.7
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.6e-119 433.7 431 51.5
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 1.1e-118 431.0 429 49.9
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 6.9e-118 428.3 421 53.2
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 7.6e-117 424.9 452 50.0
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 2.9e-116 422.9 461 48.2
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.9e-116 422.9 422 51.9
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 3.2e-115 419.5 431 47.6
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 6.1e-114 415.2 308 63.0
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.9e-112 410.2 309 60.5
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 1.1e-110 404.4 424 49.3
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 2.1e-106 390.2 414 48.8
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 3.6e-106 389.4 408 47.8
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 7.9e-106 388.3 411 47.9
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 1.0e-105 387.9 310 60.3
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 3.0e-105 386.3 367 52.6
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 3.0e-105 386.3 436 48.6
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 3.3e-104 382.9 361 54.6
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 1.7e-103 380.6 427 46.4
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 1.2e-101 374.4 413 46.7
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 1.0e-100 371.3 412 48.8
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.5e-99 366.7 437 48.5
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 4.8e-87 325.9 310 51.3
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.0e-81 308.1 317 51.1
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.4e-78 295.8 459 41.8
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 2.0e-77 293.9 459 41.8
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 5.5e-75 285.8 411 41.4
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.2e-74 284.6 443 41.8
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.1e-74 283.9 409 41.6
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 2.7e-74 283.5 411 41.1
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.8e-73 280.8 457 41.1
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 1.2e-72 278.1 300 47.0
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 4.4e-72 276.2 285 46.7
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.9e-71 272.7 241 57.3
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.0e-65 253.1 468 38.0
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.9e-61 239.2 416 38.9
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 9.5e-59 231.9 262 48.5
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 4.4e-56 223.0 257 45.9
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 7.5e-56 222.2 241 48.5
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 7.5e-56 222.2 328 45.7
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 7.3e-51 205.7 197 52.8
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.7e-47 193.4 148 60.8
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 6.4e-47 192.6 190 51.1
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 9.2e-46 188.7 221 45.2
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 1.7e-44 184.5 358 32.1
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 6.6e-44 182.6 278 38.8
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.6e-42 177.9 337 32.9
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 3.6e-42 176.8 422 26.5
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.2e-40 171.8 174 51.1
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 9.9e-40 168.7 230 43.5
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.9e-40 168.7 230 43.5
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 8.4e-39 165.6 151 52.3
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.3e-36 158.3 134 59.7
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 4.6e-29 133.3 370 27.0
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 6.0e-29 132.9 140 45.7
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 8.7e-28 129.0 117 53.8
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 3.3e-27 127.1 303 31.0
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 2.8e-26 124.0 86 65.1
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 8.1e-26 122.5 382 27.2
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.9e-22 111.3 104 52.9
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.4e-22 110.9 138 43.5
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 4.2e-22 110.2 82 62.2
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 3.1e-17 94.0 97 45.4
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 4.5e-16 90.1 119 39.5
Cfa025993 Carpinus fangiana HOM05D002214 ORTHO05D125925 1.4e-09 68.6 233 26.6
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 4.0e-09 67.0 101 42.6
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.0e-08 64.7 63 50.8
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.0e-07 62.4 146 34.2
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 1.1e-06 58.9 56 57.1
FAN24G2079 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.1e-06 56.2 46 54.3


User provided reference genes

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