Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 1.7e-218 762.3 372 100.0
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 3.0e-186 655.2 382 85.9
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 3.3e-177 625.2 370 84.3
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 8.7e-170 600.5 349 85.1
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.5e-145 520.0 360 71.7
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.9e-140 503.1 367 68.4
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 5.5e-140 501.5 367 69.2
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 7.2e-140 501.1 376 67.8
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 9.4e-140 500.7 352 69.0
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 1.2e-139 500.4 352 69.3
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 2.3e-138 496.1 366 68.6
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 6.7e-138 494.6 357 68.6
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.5e-137 493.4 355 67.6
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 5.7e-137 491.5 360 68.6
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 9.7e-137 490.7 358 68.7
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 1.3e-136 490.3 358 69.6
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 2.2e-136 489.6 356 66.0
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 3.7e-136 488.8 358 69.3
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.1e-135 487.3 349 67.3
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 4.1e-135 485.3 375 66.7
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.2e-134 483.8 357 67.5
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 2.0e-134 483.0 367 67.0
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 4.5e-134 481.9 346 67.1
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 5.9e-134 481.5 356 67.7
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 1.3e-133 480.3 358 66.2
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 3.8e-133 478.8 358 68.4
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 7.2e-132 474.6 366 66.4
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 1.6e-131 473.4 356 67.1
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 4.7e-131 471.9 353 66.3
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 5.2e-130 468.4 363 64.5
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 2.0e-129 466.5 369 65.3
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 3.3e-129 465.7 362 65.5
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 5.7e-129 464.9 366 65.6
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 5.7e-129 464.9 360 65.0
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.2e-128 463.0 369 65.0
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 2.8e-128 462.6 368 63.9
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 7.7e-126 454.5 350 64.9
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 7.7e-126 454.5 413 58.6
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.9e-124 449.9 369 64.0
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.5e-124 449.5 351 63.0
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 2.5e-124 449.5 360 64.7
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 2.7e-123 446.0 357 63.6
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 1.4e-122 443.7 361 62.9
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.4e-122 443.7 369 63.4
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.4e-122 443.7 349 64.8
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.8e-122 443.4 354 61.9
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.0e-122 442.6 349 63.9
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 3.0e-122 442.6 365 61.4
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 4.0e-122 442.2 331 67.4
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 2.6e-121 439.5 370 60.5
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 3.4e-121 439.1 356 62.6
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 1.3e-120 437.2 351 61.5
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 3.7e-120 435.6 366 60.1
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 1.4e-119 433.7 387 58.7
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 1.8e-119 433.3 360 60.0
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.8e-119 433.3 355 60.3
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 7.0e-119 431.4 369 60.4
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 7.0e-119 431.4 352 60.8
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 9.1e-119 431.0 359 61.0
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 9.1e-119 431.0 363 60.1
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 1.2e-118 430.6 351 60.1
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 1.2e-118 430.6 352 61.1
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 2.7e-118 429.5 354 60.2
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 5.9e-118 428.3 355 60.3
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.0e-117 427.6 358 63.4
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 1.3e-117 427.2 355 60.0
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.3e-117 427.2 355 59.4
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.3e-117 427.2 355 59.4
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 1.7e-117 426.8 367 59.7
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 2.9e-117 426.0 355 62.3
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 2.9e-117 426.0 367 59.4
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 8.5e-117 424.5 359 60.4
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 8.5e-117 424.5 355 61.1
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 8.5e-117 424.5 351 60.4
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.5e-116 423.7 353 59.8
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.9e-116 423.3 353 60.6
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 4.2e-116 422.2 353 59.5
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 4.2e-116 422.2 353 59.5
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 4.2e-116 422.2 361 61.2
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 7.2e-116 421.4 354 61.3
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 2.8e-115 419.5 364 59.6
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 4.7e-115 418.7 358 57.8
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 6.1e-115 418.3 368 58.7
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 1.5e-113 413.7 383 56.4
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 9.8e-113 411.0 358 59.5
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 1.3e-112 410.6 361 57.9
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 2.8e-112 409.5 398 53.5
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.8e-111 406.8 364 56.6
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 3.3e-108 396.0 356 58.4
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 5.6e-108 395.2 373 55.2
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 6.8e-98 361.7 374 52.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 2.6e-97 359.8 317 58.0
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.9e-96 356.3 350 54.0
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 1.1e-95 354.4 286 63.3
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 7.8e-94 348.2 352 54.3
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 6.6e-93 345.1 282 63.8
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 9.5e-92 341.3 282 62.8
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.1e-82 311.2 351 50.7
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 1.8e-82 310.5 278 56.5
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 8.9e-82 308.1 389 41.9
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.6e-81 306.6 370 46.5
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 3.5e-78 296.2 351 46.7
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 3.4e-73 279.6 357 42.0
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 6.0e-70 268.9 360 39.4
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 6.6e-69 265.4 362 43.4
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 7.9e-46 188.7 332 34.6
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.1e-42 178.3 155 63.2
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.1e-42 176.4 155 62.6
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 2.0e-41 174.1 232 39.7
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 4.6e-38 162.9 353 32.0
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.1e-36 158.3 312 33.0
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 4.8e-35 152.9 184 46.7
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 5.3e-34 149.4 153 47.7
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 3.9e-21 106.7 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.2e-17 95.1 110 50.0
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 4.5e-17 93.2 78 62.8
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.7e-14 84.0 143 37.1
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 8.0e-14 82.4 79 55.7
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 8.0e-14 82.4 260 25.0
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 1.8e-13 81.3 125 43.2
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 6.3e-11 72.8 74 51.4
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 5.9e-09 66.2 47 63.8
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 5.0e-08 63.2 65 52.3
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 5.0e-08 63.2 65 52.3
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 6.5e-08 62.8 52 57.7
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.5e-07 60.8 64 54.7


User provided reference genes

Program Settings