Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G030190 Cucumis sativus L. HOM05D001654 ORTHO05D008085 2.6e-62 241.9 122 100.0
MELO3C015905.2 Cucumis melo HOM05D001654 ORTHO05D008085 4.4e-54 214.5 113 96.5
ClCG09G004900 Citrullus lanatus HOM05D001654 ORTHO05D008085 6.4e-45 184.1 113 85.8
Sed0023884 Sechium edule HOM05D001654 ORTHO05D008085 3.2e-36 155.2 113 74.3
Prupe.3G007000 Prunus persica HOM05D001654 ORTHO05D008085 7.8e-27 124.0 113 64.6
CiPaw.07G120500 Carya illinoinensis HOM05D001654 ORTHO05D008085 5.1e-26 121.3 113 61.1
Cfa001520 Carpinus fangiana HOM05D001654 ORTHO05D008085 7.3e-25 117.5 113 62.8
Nn3g21818 Nelumbo nucifera HOM05D001654 ORTHO05D008085 9.6e-25 117.1 112 59.8
RcHm_v2.0_Chr3g0487011 Rosa chinensis HOM05D001654 ORTHO05D008085 9.6e-25 117.1 118 60.2
Haze_17021 Corylus avellana HOM05D001654 ORTHO05D008085 2.8e-24 115.5 113 61.9
FvH4_1g26790 Fragaria vesca HOM05D001654 ORTHO05D008085 8.1e-24 114.0 118 59.3
MD17G1279000 Malus domestica HOM05D001654 ORTHO05D008085 1.4e-23 113.2 113 58.4
Manes.05G012600 Manihot esculenta HOM05D001654 ORTHO05D008085 1.8e-23 112.8 113 60.2
FAN23G2580 Fragaria x ananassa HOM05D001654 ORTHO05D008085 4.0e-23 111.7 118 58.5
FAN19G0421 Fragaria x ananassa HOM05D001654 ORTHO05D008085 6.9e-23 110.9 118 58.5
FAN28G2334 Fragaria x ananassa HOM05D001654 ORTHO05D008085 6.9e-23 110.9 118 58.5
QL12p018829 Quercus lobata HOM05D001654 ORTHO05D008085 9.0e-23 110.5 117 56.4
TWI14G0226 Tripterygium wilfordii HOM05D001654 ORTHO05D008085 9.0e-23 110.5 114 60.5
Cpa.g.sc18.96 Carica papaya HOM05D001654 ORTHO05D008085 2.6e-22 109.0 110 57.3
PGR083G0503 Punica granatum HOM05D001654 ORTHO05D008085 3.4e-22 108.6 119 54.6
COL.COLO4_23188 Corchorus olitorius HOM05D001654 ORTHO05D008085 4.4e-22 108.2 117 55.6
Duzib138G0592 Durio zibethinus HOM05D001654 ORTHO05D008085 5.8e-22 107.8 115 55.7
Atru.chr5.945 Acer truncatum HOM05D001654 ORTHO05D008085 1.3e-21 106.7 119 59.7
CANSAT25G2218 Cannabis sativa HOM05D001654 ORTHO05D008085 2.9e-21 105.5 118 60.2
PSO761G0367 Papaver somniferum HOM05D001654 ORTHO05D008085 1.9e-20 102.8 115 54.8
PSO210G1196 Papaver somniferum HOM05D001654 ORTHO05D008085 1.2e-19 100.1 115 55.7
Gohir.D12G126700 Gossypium hirsutum HOM05D001654 ORTHO05D008085 2.1e-19 99.4 117 52.1
A03p31360 Brassica napus HOM05D001654 ORTHO05D008085 2.7e-19 99.0 122 53.3
Gohir.A12G123100 Gossypium hirsutum HOM05D001654 ORTHO05D008085 4.6e-19 98.2 117 52.1
BraA03t12316Z Brassica rapa HOM05D001654 ORTHO05D008085 7.9e-19 97.4 122 53.3
MBI19_g03284_MAGBIO Magnolia biondii HOM05D001654 ORTHO05D008085 1.0e-18 97.1 73 67.1
Phvul.001G214800 Phaseolus vulgaris HOM05D001654 ORTHO05D008085 1.0e-18 97.1 65 76.9
RcHm_v2.0_Chr4g0387891 Rosa chinensis HOM05D001654 ORTHO05D008085 1.0e-18 97.1 108 56.5
RcHm_v2.0_Chr5g0059041 Rosa chinensis HOM05D001654 ORTHO05D008085 1.0e-18 97.1 108 56.5
THA.LOC104801311 Tarenaya hassleriana HOM05D001654 ORTHO05D008085 1.0e-18 97.1 72 70.8
Potri.002G192200 Populus trichocarpa HOM05D001654 ORTHO05D008085 1.3e-18 96.7 78 67.9
Glyma.19G218400 Glycine max HOM05D001654 ORTHO05D008085 1.7e-18 96.3 70 75.7
Prupe.6G008100 Prunus persica HOM05D001654 ORTHO05D008085 1.7e-18 96.3 70 74.3
RcHm_v2.0_Chr1g0346861 Rosa chinensis HOM05D001654 ORTHO05D008085 1.7e-18 96.3 108 56.5
GSVIVG01028158001 Vitis vinifera HOM05D001654 ORTHO05D008085 2.3e-18 95.9 116 57.8
Gorai.008G137600 Gossypium raimondii HOM05D001654 ORTHO05D008085 3.0e-18 95.5 117 50.4
Medtr7g109850 Medicago truncatula HOM05D001654 ORTHO05D008085 5.1e-18 94.7 114 52.6
Thecc.01G318700 Theobroma cacao HOM05D001654 ORTHO05D008085 6.6e-18 94.4 113 50.4
Dinv00086 Davidia involucrata HOM05D001654 ORTHO05D008085 8.7e-18 94.0 115 55.7
Dinv12117 Davidia involucrata HOM05D001654 ORTHO05D008085 8.7e-18 94.0 115 55.7
VMungo1383G1372 Vigna mungo HOM05D001654 ORTHO05D008085 8.7e-18 94.0 52 90.4
arahy.Tifrunner.gnm1.ann1.ZIY6TR Arachis hypogaea HOM05D001654 ORTHO05D008085 1.9e-17 92.8 115 49.6
Ca_09225_v3 Cicer arietinum L. HOM05D001654 ORTHO05D008085 1.9e-17 92.8 76 64.5
Ciclev10022131m.g Citrus clementina HOM05D001654 ORTHO05D008085 1.9e-17 92.8 66 75.8
Hma1.2p1_0965F.1_g242110 Hydrangea macrophylla HOM05D001654 ORTHO05D008085 1.9e-17 92.8 118 55.9
C03p38270 Brassica napus HOM05D001654 ORTHO05D008085 2.5e-17 92.4 124 52.4
Thhalv10028839m.g Eutrema salsugineum HOM05D001654 ORTHO05D008085 2.5e-17 92.4 73 69.9
Sp6g01820 Schrenkiella parvula HOM05D001654 ORTHO05D008085 2.5e-17 92.4 129 51.2
BcaB01g02401 Brassica carinata HOM05D001654 ORTHO05D008085 3.3e-17 92.0 122 51.6
BcaC01g06789 Brassica carinata HOM05D001654 ORTHO05D008085 3.3e-17 92.0 124 51.6
BolC3t16108H Brassica oleracea HOM05D001654 ORTHO05D008085 3.3e-17 92.0 124 51.6
Hma1.2p1_0965F.1_g242120 Hydrangea macrophylla HOM05D001654 ORTHO05D008085 3.3e-17 92.0 55 85.5
Aqoxy2G02641 Aquilegia oxysepala HOM05D001654 ORTHO05D008085 4.3e-17 91.7 111 50.5
Potri.014G117700 Populus trichocarpa HOM05D001654 ORTHO05D008085 7.3e-17 90.9 73 65.8
Sabra14G0087300 Salix brachista HOM05D001654 ORTHO05D008085 1.6e-16 89.7 119 52.1
TAR365G0959 Trochodendron aralioides HOM05D001654 ORTHO05D008085 2.1e-16 89.4 113 51.3
Sc04g0010540 Simmondsia chinensis HOM05D001654 ORTHO05D008085 2.8e-16 89.0 74 64.9
vmacro15099 Vaccinium macrocarpon HOM05D001654 ORTHO05D008085 2.8e-16 89.0 101 52.5
ATR0693G051 Amborella trichopoda HOM05D001654 ORTHO05D008085 3.6e-16 88.6 60 73.3
EL10As5g23607 Beta vulgaris HOM05D001654 ORTHO05D008085 3.6e-16 88.6 121 47.1
Eucgr.H00910 Eucalyptus grandis HOM05D001654 ORTHO05D008085 3.6e-16 88.6 116 51.7
Lalb_Chr04g0260031 Lupinus albus HOM05D001654 ORTHO05D008085 3.6e-16 88.6 55 80.0
Nitab4.5_0010752g0010 Nicotiana tabacum HOM05D001654 ORTHO05D008085 3.6e-16 88.6 60 75.0
Peaxi162Scf00770g00013 Petunia axillaris HOM05D001654 ORTHO05D008085 4.8e-16 88.2 55 80.0
HPP92_001223 Vanilla planifolia HOM05D000443 ORTHO05D008085 4.8e-16 88.2 63 74.6
Nitab4.5_0000222g0090 Nicotiana tabacum HOM05D001654 ORTHO05D008085 6.2e-16 87.8 60 75.0
Psat3g019000 Pisum sativum HOM05D001654 ORTHO05D008085 6.2e-16 87.8 60 73.3
TPR.G4072 Trifolium pratense HOM05D001654 ORTHO05D008085 8.1e-16 87.4 52 82.7
Aa31LG5G1590 Aethionema arabicum HOM05D001654 ORTHO05D008085 1.1e-15 87.0 63 74.6
AT4G01940 Arabidopsis thaliana HOM05D001654 ORTHO05D008085 1.1e-15 87.0 123 51.2
CAN.G293.5 Capsicum annuum HOM05D001654 ORTHO05D008085 1.1e-15 87.0 53 79.2
Lj1g0022661 Lotus japonicus HOM05D001654 ORTHO05D008085 1.1e-15 87.0 64 71.9
Medtr8g038785 Medicago truncatula HOM05D000371 ORTHO05D001484 1.4e-15 86.7 52 84.6
Sopen01g031000 Solanum pennellii HOM05D001654 ORTHO05D008085 1.4e-15 86.7 59 72.9
Carub.0006s3529 Capsella rubella HOM05D001654 ORTHO05D008085 1.8e-15 86.3 64 73.4
AUR62011756 Chenopodium quinoa HOM05D001654 ORTHO05D008085 1.8e-15 86.3 116 44.0
SGA_v2.0_scaffold80G25718 Striga asiatica HOM05D001654 ORTHO05D008085 1.8e-15 86.3 52 84.6
CARHR249740 Cardamine hirsuta HOM05D001654 ORTHO05D008085 2.4e-15 85.9 51 84.3
PGSC0003DMG400009020 Solanum tuberosum HOM05D001654 ORTHO05D008085 2.4e-15 85.9 51 82.4
AL6G51350 Arabidopsis lyrata HOM05D001654 ORTHO05D008085 4.0e-15 85.1 123 50.4
Lsat_1_v5_gn_8_76661 Lactuca sativa HOM05D001654 ORTHO05D008085 4.0e-15 85.1 49 85.7
Solyc01g079220.4 Solanum lycopersicum HOM05D001654 ORTHO05D008085 4.0e-15 85.1 115 47.8
Actinidia25865 Actinidia chinensis HOM05D001654 ORTHO05D008085 5.3e-15 84.7 50 82.0
AUR62024601 Chenopodium quinoa HOM05D001654 ORTHO05D008085 6.9e-15 84.3 113 42.5
Oeu008488.1 Olea europaea HOM05D001654 ORTHO05D008085 6.9e-15 84.3 64 68.8
ECA247G3538 Erigeron canadensis HOM05D001654 ORTHO05D008085 9.0e-15 84.0 52 82.7
HanXRQChr10g0284781 Helianthus annuus HOM05D001654 ORTHO05D008085 1.2e-14 83.6 73 64.4
arahy.Tifrunner.gnm1.ann1.T1V4H7 Arachis hypogaea HOM05D001654 ORTHO05D008085 2.0e-14 82.8 116 46.6
Rhsim01G0292400 Rhododendron simsii HOM05D001654 ORTHO05D008085 2.0e-14 82.8 65 67.7
MSTRG.21710 Avicennia marina HOM05D001654 ORTHO05D008085 3.4e-14 82.0 70 62.9
CDE05G0483 Ceratophyllum demersum HOM05D001654 ORTHO05D008085 3.4e-14 82.0 111 45.9
Migut.D00055 Erythranthe guttata HOM05D001654 ORTHO05D008085 3.4e-14 82.0 52 78.8
CDE11G0536 Ceratophyllum demersum HOM05D001654 ORTHO05D008085 4.5e-14 81.6 77 55.8
Cc01_g21660 Coffea canephora HOM05D001654 ORTHO05D008085 1.7e-13 79.7 56 75.0
Mapoly0190s0016 Marchantia polymorpha HOM05D001654 ORTHO05D008085 3.8e-13 78.6 55 69.1
Os03g0314700 Oryza sativa ssp. japonica HOM05D001654 ORTHO05D008085 6.4e-13 77.8 65 61.5
SalBow3G3994 Salvia bowleyana HOM05D001654 ORTHO05D008085 1.1e-12 77.0 52 75.0
Hund02947 Selenicereus undatus HOM05D001654 ORTHO05D008085 1.1e-12 77.0 53 67.9
Zm00001eb015070 Zea mays HOM05D001654 ORTHO05D008085 4.2e-12 75.1 67 62.7
Lj2A1210G30 Lonicera japonica HOM05D001654 ORTHO05D008085 5.4e-12 74.7 131 38.9
Pp3c2_23200 Physcomitrium patens HOM05D001654 ORTHO05D008085 5.4e-12 74.7 62 62.9
unitig_62.g23905 Utricularia gibba HOM05D001654 ORTHO05D008085 5.4e-12 74.7 78 55.1
SMO144G0019 Selaginella moellendorffii HOM05D001654 ORTHO05D008085 1.2e-11 73.6 58 62.1
SMO118G0472 Selaginella moellendorffii HOM05D001654 ORTHO05D008085 2.7e-11 72.4 59 59.3
CBR_g4584 Chara braunii HOM05D001654 ORTHO05D008085 2.8e-08 62.4 76 48.7
SEGI_34300 Sequoiadendron giganteum HOM05D001654 ORTHO05D008085 2.8e-08 62.4 49 61.2
CSS0008228 Camellia sinensis var. sinensis HOM05D001654 ORTHO05D008085 4.8e-08 61.6 33 87.9
ECA236G3292 Erigeron canadensis HOM05D001654 ORTHO05D002773 3.4e-06 55.5 65 41.5
MSTRG.5213 Avicennia marina HOM05D001654 ORTHO05D002773 4.5e-06 55.1 110 36.4
MCO13G021 Micromonas commoda HOM05D001654 ORTHO05D002773 4.5e-06 55.1 45 57.8
Sopen01g046120 Solanum pennellii HOM05D001654 ORTHO05D002773 7.6e-06 54.3 77 41.6
Potri.003G009300 Populus trichocarpa HOM05D001654 ORTHO05D002773 1.0e-05 53.9 108 38.0


User provided reference genes

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