Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 0.0e+00 1135.2 588 100.0
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 0.0e+00 1084.3 592 95.9
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 4.9e-284 980.7 581 89.7
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 6.8e-278 960.3 591 85.3
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.7e-276 955.7 604 82.9
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.0e-216 756.1 599 66.8
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 8.2e-215 750.7 602 66.4
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.8e-214 749.6 602 65.8
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.8e-214 749.6 602 65.6
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.1e-214 748.4 602 65.6
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 7.7e-213 744.2 598 68.4
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-211 740.0 578 67.8
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.5e-211 740.0 599 65.9
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.0e-209 733.8 590 65.8
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.3e-209 732.6 585 68.2
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 3.7e-207 725.3 601 65.2
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.1e-206 723.8 585 65.5
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.2e-203 712.2 597 64.5
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 5.5e-203 711.4 581 66.3
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 7.2e-203 711.1 610 63.6
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 9.4e-203 710.7 589 64.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 9.4e-203 710.7 578 64.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.2e-202 710.3 596 62.6
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.2e-202 710.3 585 62.1
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.2e-202 710.3 574 66.0
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 2.7e-202 709.1 608 66.1
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.0e-201 707.2 586 67.4
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.0e-201 707.2 593 66.8
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.3e-201 706.1 583 65.0
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.1e-198 695.7 603 62.2
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.2e-197 693.7 589 64.2
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.2e-197 693.7 579 63.0
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.2e-197 693.7 569 67.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.2e-197 693.7 591 64.0
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.6e-197 693.3 575 64.0
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.0e-196 690.6 603 64.5
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-196 690.3 586 62.8
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.3e-196 689.5 585 63.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.9e-196 689.1 591 61.9
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-195 687.2 600 61.5
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.5e-195 686.8 587 62.7
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.9e-195 686.4 570 64.7
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.2e-194 683.7 579 63.0
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.2e-194 683.7 595 64.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 3.6e-194 682.2 599 63.1
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.7e-194 681.8 596 64.6
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 6.1e-194 681.4 600 61.0
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.0e-194 681.0 608 61.8
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 8.0e-194 681.0 590 60.8
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.0e-193 680.6 488 70.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.4e-193 680.2 581 62.3
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.3e-193 679.5 598 61.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.3e-193 679.5 588 61.7
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 3.0e-193 679.1 596 59.9
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 4.0e-193 678.7 608 61.8
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.0e-193 678.7 591 60.7
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 8.9e-193 677.6 588 61.6
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.2e-192 677.2 589 61.1
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.2e-192 677.2 596 60.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.2e-192 677.2 569 63.6
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-192 676.8 512 69.7
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-192 676.8 616 61.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.7e-192 674.9 597 60.1
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 9.8e-192 674.1 594 60.6
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.8e-192 674.1 570 63.3
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 6.3e-191 671.4 585 62.2
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 2.4e-190 669.5 609 59.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.1e-190 669.1 622 58.0
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 7.0e-190 667.9 597 59.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 7.0e-190 667.9 600 59.5
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.6e-189 666.8 585 63.6
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 2.7e-189 666.0 580 61.6
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 3.5e-189 665.6 573 62.1
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.8e-189 664.5 592 59.8
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.3e-188 663.7 573 62.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.9e-187 659.8 597 59.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.5e-187 659.4 622 58.8
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.5e-187 659.4 643 59.3
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 5.6e-187 658.3 600 60.5
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 9.5e-187 657.5 587 60.0
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.2e-186 657.1 603 61.7
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 8.0e-186 654.4 634 59.8
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.8e-185 653.3 599 60.1
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 5.2e-185 651.7 530 65.8
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.5e-184 650.2 605 58.8
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.5e-184 650.2 597 61.0
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.0e-184 649.8 588 59.9
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.4e-184 649.0 616 56.8
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.3e-183 647.1 577 61.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 2.2e-183 646.4 600 59.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 6.4e-183 644.8 598 59.9
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.4e-182 643.7 533 63.0
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 7.0e-182 641.3 576 61.8
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 2.7e-181 639.4 598 58.4
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 4.6e-181 638.6 498 68.9
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 4.6e-181 638.6 613 56.6
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 6.0e-181 638.3 600 59.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.8e-181 637.9 592 59.6
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.7e-180 636.7 592 59.1
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 5.0e-180 635.2 588 59.5
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.1e-179 634.0 570 59.8
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.5e-179 633.6 576 61.1
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.9e-179 633.3 571 60.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.9e-179 633.3 650 56.2
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.5e-179 632.9 588 59.9
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 3.3e-179 632.5 596 59.1
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.3e-179 632.5 604 58.3
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 5.6e-179 631.7 601 60.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 5.6e-179 631.7 656 55.3
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 7.3e-179 631.3 595 59.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-178 630.6 600 58.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-178 630.2 616 57.3
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 3.1e-177 625.9 596 58.9
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.1e-177 625.9 596 59.1
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.5e-176 623.6 596 58.7
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.9e-175 619.4 623 56.5
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.1e-174 617.5 595 58.5
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.3e-172 609.8 596 59.4
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 2.5e-171 606.3 586 57.2
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 9.5e-171 604.4 585 56.6
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.6e-170 603.6 559 58.9
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.8e-169 600.1 572 57.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.8e-169 600.1 485 66.0
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.1e-166 590.9 591 55.7
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 2.8e-162 576.2 562 56.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-161 574.3 566 56.7
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.0e-160 570.1 571 54.6
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.4e-160 569.3 444 65.3
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 7.6e-160 568.2 579 55.3
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 3.9e-156 555.8 594 53.4
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.3e-155 551.6 549 54.6
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.2e-152 544.3 562 52.7
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.5e-152 543.9 580 54.3
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.0e-152 543.5 505 61.8
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.6e-148 528.5 624 49.4
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.6e-146 522.7 552 52.5
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.1e-142 511.1 455 60.7
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.0e-136 490.3 563 49.7
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.7e-135 487.3 568 48.9
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 4.6e-133 479.2 568 49.6
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.8e-130 469.9 445 56.9
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.8e-130 469.2 362 67.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.1e-121 441.4 338 66.9
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 8.5e-111 405.2 367 57.8
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 3.1e-105 386.7 291 69.1
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.2e-102 376.3 626 36.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.6e-99 367.1 334 58.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 8.5e-95 352.1 381 53.5
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.4e-65 253.1 274 56.9
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 6.0e-64 249.6 163 79.1
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 7.5e-59 232.6 228 59.6
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 4.4e-51 206.8 246 49.2
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 7.3e-46 189.5 139 74.1
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 4.4e-35 153.7 293 33.8
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 7.6e-35 152.9 507 25.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.5e-30 138.7 562 23.5
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.6e-30 136.7 167 52.1
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 3.3e-22 110.9 127 48.0
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 1.1e-20 105.9 78 61.5
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.1e-20 105.9 149 43.6
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.4e-20 105.5 82 61.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.7e-18 98.6 66 78.8
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.2e-17 94.4 88 58.0
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.7e-15 86.7 199 39.7
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.9e-14 85.1 100 47.0
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 9.6e-14 82.8 72 56.9
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 2.8e-13 81.3 83 55.4
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 6.3e-13 80.1 103 46.6
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.8e-07 62.0 267 29.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 3.9e-07 60.8 35 82.9
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 1.5e-06 58.9 36 80.6
TPR.G15724 Trifolium pratense HOM05D001219 ORTHO05D001017 7.4e-06 56.6 258 28.3


User provided reference genes

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