Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G027260 Cucumis sativus L. HOM05D008619 ORTHO05D000090 5.3e-81 306.2 294 100.0
CsaV3_7G027240 Cucumis sativus L. HOM05D008619 ORTHO05D000090 3.3e-22 110.9 115 59.1
CsaV3_7G027720 Cucumis sativus L. HOM05D008619 ORTHO05D000090 3.4e-19 100.9 130 47.7
ClCG09G008330 Citrullus lanatus HOM05D008619 ORTHO05D000090 9.9e-19 99.4 69 69.6
CsaV3_7G027280 Cucumis sativus L. HOM05D008619 ORTHO05D000090 1.1e-17 95.9 72 65.3
CsaV3_7G027920 Cucumis sativus L. HOM05D008619 ORTHO05D000090 1.1e-17 95.9 121 48.8
MELO3C028898.2 Cucumis melo HOM05D008619 ORTHO05D000090 1.9e-17 95.1 73 65.8
MELO3C012708.2 Cucumis melo HOM05D008619 ORTHO05D000090 2.1e-16 91.7 134 47.0
CsaV3_7G022190 Cucumis sativus L. HOM05D008619 ORTHO05D000090 4.6e-16 90.5 134 48.5
Sed0014525 Sechium edule HOM05D008619 ORTHO05D000090 1.1e-14 85.9 110 49.1
Sed0014539 Sechium edule HOM05D008619 ORTHO05D000090 4.3e-14 84.0 110 46.4
ClCG09G021760 Citrullus lanatus HOM05D008619 ORTHO05D000090 7.3e-14 83.2 130 40.8
Sed0025187 Sechium edule HOM05D008619 ORTHO05D000090 6.2e-13 80.1 62 61.3
ClCG00G006240 Citrullus lanatus HOM05D008619 ORTHO05D000090 1.4e-12 79.0 140 41.4
ClCG01G008120 Citrullus lanatus HOM05D008619 ORTHO05D000090 1.4e-12 79.0 140 41.4
Sed0002057 Sechium edule HOM05D008619 ORTHO05D000090 3.1e-12 77.8 75 49.3
Sed0010182 Sechium edule HOM05D008619 ORTHO05D000090 4.0e-12 77.4 75 53.3
Sed0021875 Sechium edule HOM05D008619 ORTHO05D000090 4.0e-12 77.4 120 40.8
Sed0018285 Sechium edule HOM05D008619 ORTHO05D000090 3.4e-11 74.3 103 45.6
Actinidia33760 Actinidia chinensis HOM05D000162 ORTHO05D000090 4.4e-11 73.9 125 37.6
Haze_24551 Corylus avellana HOM05D000162 ORTHO05D000090 4.4e-11 73.9 153 35.9
MELO3C015722.2 Cucumis melo HOM05D008619 ORTHO05D025208 4.4e-11 73.9 53 67.9
Sed0005043 Sechium edule HOM05D008619 ORTHO05D000090 2.2e-10 71.6 96 47.9
MD05G1203800 Malus domestica HOM05D008619 ORTHO05D000090 4.9e-10 70.5 79 48.1
ClCG01G008220 Citrullus lanatus HOM05D008619 ORTHO05D000090 1.1e-09 69.3 147 38.1
RcHm_v2.0_Chr6g0289221 Rosa chinensis HOM05D000162 ORTHO05D000090 1.1e-09 69.3 129 35.7
FvH4_2g22260 Fragaria vesca HOM05D000162 ORTHO05D000090 1.9e-09 68.6 126 36.5
Prupe.8G230100 Prunus persica HOM05D008619 ORTHO05D000090 1.9e-09 68.6 81 45.7
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.4e-09 67.0 119 35.3
RcHm_v2.0_Chr6g0289191 Rosa chinensis HOM05D000162 ORTHO05D000090 5.4e-09 67.0 116 38.8
CSS0034526 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.6e-08 65.5 116 40.5
CSS0040127 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.6e-08 65.5 116 40.5
FAN24G2639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.6e-08 65.5 126 35.7
Hma1.2p1_0172F.1_g076330 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 2.7e-08 64.7 81 44.4
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.5e-08 64.3 65 43.1
QL04p081370 Quercus lobata HOM05D000162 ORTHO05D000090 6.0e-08 63.5 149 40.3
GSVIVG01000757001 Vitis vinifera HOM05D000162 ORTHO05D000090 7.8e-08 63.2 125 36.0
QL12p042932 Quercus lobata HOM05D000162 ORTHO05D000090 1.7e-07 62.0 149 39.6
vmacro02633 Vaccinium macrocarpon HOM05D008619 ORTHO05D000090 3.9e-07 60.8 103 37.9
THA.LOC104808603 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.6e-07 60.1 66 39.4
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.6e-07 60.1 99 39.4
Rhsim07G0073200 Rhododendron simsii HOM05D000162 ORTHO05D000090 8.7e-07 59.7 120 40.8
Thecc.01G265100 Theobroma cacao HOM05D008619 ORTHO05D000090 8.7e-07 59.7 129 34.9
vmacro13802 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 8.7e-07 59.7 68 47.1
Gorai.006G247100 Gossypium raimondii HOM05D000162 ORTHO05D000090 1.1e-06 59.3 103 33.0
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 1.1e-06 59.3 112 38.4
Sed0000927 Sechium edule HOM05D008619 ORTHO05D000090 1.5e-06 58.9 46 58.7
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.9e-06 58.5 94 40.4
Nn1g02625 Nelumbo nucifera HOM05D000162 ORTHO05D000090 2.5e-06 58.2 109 33.9
Atru.chr4.2210 Acer truncatum HOM05D000162 ORTHO05D000090 3.3e-06 57.8 110 32.7
Gohir.D09G225500 Gossypium hirsutum HOM05D000162 ORTHO05D000090 4.3e-06 57.4 103 32.0
QL03p013240 Quercus lobata HOM05D000162 ORTHO05D000090 5.6e-06 57.0 78 38.5
Sed0025833 Sechium edule HOM05D008619 ORTHO05D025208 5.6e-06 57.0 85 42.4
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.6e-06 57.0 97 37.1
COL.COLO4_20322 Corchorus olitorius HOM05D000162 ORTHO05D000090 7.3e-06 56.6 79 39.2
THA.LOC104809085 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 9.6e-06 56.2 106 38.7


User provided reference genes

Program Settings