Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 6.0e-206 721.5 664 100.0
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 1.5e-172 610.5 638 93.9
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 7.0e-138 495.4 449 86.2
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 5.4e-122 442.6 467 78.8
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 2.0e-100 370.9 465 69.5
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 2.6e-100 370.5 466 69.5
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 2.7e-97 360.5 481 67.2
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 6.0e-97 359.4 475 66.9
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 4.3e-95 353.2 450 70.9
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 7.4e-95 352.4 475 67.6
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 4.8e-94 349.7 449 69.5
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 1.4e-93 348.2 457 68.9
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 2.9e-91 340.5 449 69.5
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 6.5e-91 339.3 420 72.6
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 7.1e-90 335.9 404 74.5
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 2.1e-89 334.3 466 65.9
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 4.6e-89 333.2 407 74.0
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 4.6e-89 333.2 407 74.2
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 6.0e-89 332.8 455 66.6
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 7.9e-89 332.4 433 70.2
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 1.3e-88 331.6 409 74.1
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 1.1e-87 328.6 451 68.1
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 5.7e-87 326.2 407 62.4
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 4.8e-86 323.2 447 68.9
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 6.3e-86 322.8 470 66.4
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 6.3e-86 322.8 430 71.2
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 1.1e-85 322.0 411 74.2
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 1.4e-85 321.6 404 73.3
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.8e-85 321.2 405 72.1
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 1.8e-85 321.2 455 67.3
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 9.0e-85 318.9 453 68.4
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 9.0e-85 318.9 466 65.0
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 9.0e-85 318.9 455 67.0
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 1.5e-84 318.2 405 71.6
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 2.0e-84 317.8 455 67.0
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 2.6e-84 317.4 408 71.3
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 1.0e-83 315.5 451 68.3
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 1.0e-83 315.5 462 66.2
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 1.7e-83 314.7 460 65.7
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 1.7e-83 314.7 476 65.1
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 6.5e-83 312.8 463 64.4
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 8.5e-83 312.4 454 66.1
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 8.5e-83 312.4 455 67.7
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 1.1e-82 312.0 461 66.8
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 1.9e-82 311.2 457 65.0
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 5.5e-82 309.7 458 65.3
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 7.2e-82 309.3 460 66.7
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 9.3e-82 308.9 437 67.7
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 3.6e-81 307.0 450 67.3
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 3.6e-81 307.0 462 66.0
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 4.6e-81 306.6 457 64.8
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 4.6e-81 306.6 445 67.0
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 1.8e-80 304.7 456 64.9
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 2.3e-80 304.3 469 65.2
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 3.0e-80 303.9 443 66.4
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 5.1e-80 303.1 441 67.3
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 6.7e-80 302.8 458 64.0
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 5.7e-79 299.7 458 63.8
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 5.7e-79 299.7 458 63.8
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 8.2e-78 295.8 449 63.5
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 2.4e-77 294.3 408 49.5
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 2.4e-77 294.3 454 65.2
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 2.4e-77 294.3 454 65.2
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 3.1e-77 293.9 405 69.9
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 6.9e-77 292.7 451 65.0
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 9.1e-77 292.4 469 64.0
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 1.2e-76 292.0 445 65.8
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 1.2e-76 292.0 457 62.6
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 2.0e-76 291.2 407 70.0
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 2.9e-75 287.3 465 64.5
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 5.0e-75 286.6 456 63.6
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 2.5e-74 284.3 465 63.4
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 2.5e-74 284.3 399 70.4
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 3.2e-74 283.9 425 64.7
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 4.2e-74 283.5 456 64.3
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 5.5e-74 283.1 399 68.9
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 4.6e-73 280.0 455 62.6
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 6.7e-72 276.2 458 61.4
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 1.5e-71 275.0 455 61.5
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 5.7e-71 273.1 454 60.8
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 6.3e-70 269.6 389 66.3
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 5.9e-68 263.1 446 62.3
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 3.8e-67 260.4 547 45.0
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 1.9e-66 258.1 460 59.1
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 5.2e-64 250.0 224 57.1
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 3.7e-62 243.8 455 45.9
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 8.8e-56 222.6 460 55.4
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 2.8e-54 217.6 196 58.2
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.6e-52 211.8 227 50.7
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 1.5e-42 178.7 411 57.9
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 2.0e-36 158.3 133 60.2
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 5.0e-35 153.7 267 77.5
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.5e-34 152.1 127 59.8
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 2.2e-30 138.3 124 56.5
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 6.4e-30 136.7 130 51.5
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 6.6e-27 126.7 212 38.7
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.5e-26 125.6 104 60.6
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 3.3e-26 124.4 408 53.7
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 5.6e-26 123.6 68 80.9
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.8e-25 121.3 68 77.9
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 6.2e-25 120.2 113 51.3
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 3.1e-24 117.9 116 52.6
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.3e-22 112.5 65 75.4
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 4.9e-22 110.5 417 52.8
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 3.5e-12 77.8 131 37.4


User provided reference genes

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