Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.9e-139 499.2 258 100.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 3.8e-132 474.9 249 98.0
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.3e-127 459.9 249 95.6
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.1e-118 430.3 249 88.0
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 6.8e-105 384.4 260 79.2
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.2e-104 383.6 260 78.5
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 2.2e-103 379.4 265 77.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 4.9e-103 378.3 230 83.9
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.4e-102 376.7 265 76.6
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.4e-102 376.7 265 76.6
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 7.0e-102 374.4 265 77.0
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.5e-101 372.1 220 87.3
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 2.3e-100 369.4 255 75.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 6.6e-100 367.9 220 85.9
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 8.6e-100 367.5 233 81.1
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.5e-99 366.7 260 75.4
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.9e-99 366.3 260 75.4
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 5.6e-99 364.8 259 74.9
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.6e-98 363.2 229 81.7
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.8e-98 362.5 222 83.8
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.6e-98 362.1 221 83.7
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 4.7e-98 361.7 219 83.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 6.2e-98 361.3 233 79.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 6.2e-98 361.3 259 73.0
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 8.1e-98 360.9 222 83.8
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-97 360.5 259 73.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-97 360.5 259 73.7
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.1e-97 360.5 227 82.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.3e-97 359.4 226 81.9
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.3e-97 359.4 253 74.7
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 3.1e-97 359.0 220 80.9
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 4.0e-97 358.6 223 81.2
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 5.2e-97 358.2 254 76.4
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.0e-96 356.3 259 72.6
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 2.0e-96 356.3 260 73.1
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.0e-96 356.3 258 72.9
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.6e-96 355.9 239 77.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 4.4e-96 355.1 210 84.3
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 5.8e-96 354.8 272 72.1
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 5.8e-96 354.8 222 81.5
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.8e-96 354.8 222 81.5
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 7.5e-96 354.4 264 73.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 7.5e-96 354.4 222 82.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 9.8e-96 354.0 226 79.6
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.7e-95 353.2 220 83.2
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 2.2e-95 352.8 209 83.7
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.2e-95 352.8 223 80.7
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 2.9e-95 352.4 219 81.7
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.9e-95 352.4 221 81.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 3.7e-95 352.1 238 79.0
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 3.7e-95 352.1 222 81.1
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.1e-94 350.5 222 80.2
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.1e-94 350.5 248 75.4
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.4e-94 349.4 231 82.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 3.2e-94 349.0 218 81.7
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 3.2e-94 349.0 252 77.8
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 3.2e-94 349.0 221 80.1
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.2e-94 349.0 221 80.1
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 3.2e-94 349.0 209 82.8
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 5.4e-94 348.2 252 77.4
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 5.4e-94 348.2 231 82.3
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 5.4e-94 348.2 232 78.9
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 5.4e-94 348.2 226 79.6
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.2e-93 347.1 215 82.8
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.2e-93 347.1 252 72.2
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.1e-93 346.3 221 79.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.7e-93 345.9 231 81.0
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.5e-93 345.5 220 79.5
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 6.0e-93 344.7 220 79.5
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.0e-92 344.0 229 81.2
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.0e-92 344.0 250 72.4
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.3e-92 343.6 220 82.3
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.3e-92 343.6 258 69.8
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.3e-92 343.6 209 82.3
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.7e-92 343.2 260 72.7
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.3e-92 342.8 229 81.2
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.3e-92 342.8 255 70.2
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.0e-92 342.4 222 82.0
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 6.6e-92 341.3 220 81.4
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.1e-91 340.5 261 72.0
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.1e-91 340.5 231 79.7
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.5e-91 340.1 251 70.1
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.5e-91 340.1 262 69.1
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 3.3e-91 339.0 229 77.7
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 4.3e-91 338.6 206 85.4
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.3e-91 338.6 256 71.1
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 7.3e-91 337.8 206 85.4
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 7.3e-91 337.8 231 76.2
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 9.5e-91 337.4 223 80.3
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 9.5e-91 337.4 262 69.5
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.2e-90 337.0 220 76.8
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.2e-90 337.0 258 68.6
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 2.1e-90 336.3 262 70.6
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.4e-89 333.6 251 69.7
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.8e-89 333.2 215 78.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 2.3e-89 332.8 215 78.6
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 6.8e-89 331.3 223 74.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.8e-89 331.3 287 64.1
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 9.9e-88 327.4 240 71.2
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.1e-86 323.9 223 77.6
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 5.4e-86 321.6 204 82.4
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 3.5e-85 318.9 188 84.6
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.5e-85 318.9 305 60.3
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.9e-79 299.3 165 90.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 3.9e-76 288.9 210 72.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 3.9e-76 288.9 219 66.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.5e-75 287.0 227 68.3
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.6e-74 283.5 210 71.0
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 3.2e-70 269.2 220 69.5
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 2.8e-66 256.1 227 58.1
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.9e-63 246.1 185 64.3
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 3.8e-63 245.7 142 84.5
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.1e-54 217.6 165 64.2
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.3e-52 209.9 209 53.6
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 2.3e-52 209.9 213 51.6
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.4e-49 200.7 181 53.6
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 8.4e-47 191.4 177 52.5
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 9.3e-46 188.0 206 48.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.7e-44 181.4 117 81.2
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 8.5e-39 164.9 143 62.9
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-33 147.5 158 55.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 3.7e-26 122.9 143 40.6
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 5.5e-22 109.0 65 83.1
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.2e-21 107.8 89 71.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.3e-19 99.8 94 57.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.7e-16 90.1 53 83.0


User provided reference genes

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