Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 2.7e-252 874.8 424 100.0
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 4.1e-240 834.3 424 95.0
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 5.7e-234 813.9 452 88.5
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 1.8e-227 792.3 425 89.6
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 8.9e-187 657.1 430 73.0
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 2.4e-184 649.0 440 70.5
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 9.2e-184 647.1 440 70.2
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 3.9e-182 641.7 439 70.8
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.5e-181 639.0 436 70.4
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.2e-180 636.7 425 71.5
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 4.7e-180 634.8 426 70.9
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.8e-177 625.2 424 70.8
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 6.4e-177 624.4 424 70.8
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.1e-176 623.6 431 68.9
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.2e-175 620.2 427 69.1
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 1.7e-174 616.3 425 68.5
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 2.5e-173 612.5 423 68.1
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 4.3e-173 611.7 426 68.3
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 7.3e-173 610.9 423 67.8
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.6e-172 609.8 425 68.7
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 2.8e-172 609.0 423 67.1
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 6.2e-172 607.8 412 69.7
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 1.1e-171 607.1 413 69.0
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 1.2e-170 603.6 424 66.5
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 2.6e-170 602.4 424 69.1
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 2.6e-170 602.4 480 62.3
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 3.2e-168 595.5 424 66.7
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 3.2e-168 595.5 434 65.7
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 9.3e-168 594.0 441 65.1
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.2e-167 593.6 429 65.3
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 3.5e-167 592.0 493 61.1
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 7.9e-167 590.9 420 66.7
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 7.9e-167 590.9 436 66.1
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 1.0e-166 590.5 425 64.7
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 1.3e-166 590.1 436 66.3
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 8.7e-166 587.4 431 65.4
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 2.5e-165 585.9 434 64.3
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 2.1e-164 582.8 427 64.4
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 2.1e-164 582.8 427 64.4
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 4.8e-164 581.6 427 64.4
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 6.2e-164 581.3 426 64.3
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 8.1e-164 580.9 426 63.8
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 8.1e-164 580.9 427 64.2
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 4.0e-163 578.6 426 64.3
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 4.0e-163 578.6 434 63.4
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 9.0e-163 577.4 427 63.9
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 9.0e-163 577.4 427 63.9
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 9.0e-163 577.4 453 62.9
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 2.6e-162 575.9 413 65.1
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 6.4e-161 571.2 426 63.1
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 8.4e-161 570.9 429 63.4
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 5.5e-160 568.2 427 64.2
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.1e-159 566.2 425 64.2
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 3.5e-159 565.5 426 63.6
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 6.0e-159 564.7 426 62.9
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 2.3e-158 562.8 415 62.7
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 2.5e-157 559.3 455 59.1
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 9.6e-157 557.4 465 59.8
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 2.1e-156 556.2 424 62.5
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.4e-155 553.5 429 62.2
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 2.4e-155 552.7 410 63.4
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 3.1e-155 552.4 429 62.9
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 5.3e-155 551.6 426 60.3
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 1.5e-154 550.1 372 68.8
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 2.0e-154 549.7 434 60.8
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 4.5e-154 548.5 428 61.2
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 1.3e-150 537.0 425 60.7
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.5e-149 533.5 425 59.8
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 9.7e-149 530.8 425 59.5
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.8e-147 526.6 425 59.1
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.5e-144 515.0 413 61.0
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 9.4e-144 514.2 442 56.3
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 1.4e-142 510.4 431 59.9
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 6.3e-140 501.5 424 57.1
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 3.1e-139 499.2 425 58.6
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 6.9e-139 498.0 349 70.2
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 6.9e-139 498.0 429 58.0
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 5.1e-134 481.9 429 56.9
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 1.1e-133 480.7 425 57.4
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 1.1e-133 480.7 425 57.4
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 5.9e-130 468.4 385 57.7
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 4.2e-128 462.2 464 54.1
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 6.1e-127 458.4 404 52.7
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 5.7e-125 451.8 346 61.8
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 5.0e-121 438.7 433 47.6
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.2e-119 434.1 338 62.4
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.6e-119 433.7 352 62.5
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 1.5e-109 400.6 446 43.7
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 3.8e-105 386.0 427 43.3
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 2.8e-103 379.8 498 40.0
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 8.9e-102 374.8 410 43.7
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 4.7e-87 325.9 248 60.9
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 5.2e-86 322.4 199 74.4
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 1.7e-84 317.4 190 78.9
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 4.6e-82 309.3 214 68.2
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 6.0e-82 308.9 385 41.0
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.4e-70 271.2 187 68.4
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 1.2e-63 248.1 186 64.5
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.1e-62 245.0 183 60.1
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.8e-54 217.6 159 62.3
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.1e-46 191.8 147 54.4
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 3.1e-46 190.3 146 67.1
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 1.2e-45 188.3 146 66.4
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 3.4e-45 186.8 146 65.8
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 7.6e-45 185.7 182 57.1
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 6.4e-44 182.6 152 57.2
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 7.9e-42 175.6 123 65.9
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.8e-41 174.5 106 76.4
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 9.6e-40 168.7 127 70.1
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.6e-37 160.6 110 69.1
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 4.5e-37 159.8 101 70.3
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.0e-36 158.7 114 67.5
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.1e-35 155.2 125 57.6
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.8e-30 137.9 88 70.5
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 1.7e-28 131.3 86 73.3
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 2.9e-28 130.6 75 77.3
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 7.2e-27 125.9 83 68.7
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 9.4e-27 125.6 83 66.3
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 6.1e-26 122.9 128 46.1
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.7e-23 114.8 80 57.5
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 1.7e-23 114.8 116 51.7
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.4e-22 111.7 88 56.8
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 6.9e-22 109.4 61 75.4
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 5.9e-21 106.3 59 74.6
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 1.0e-17 95.5 171 32.2
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 4.8e-15 86.7 65 61.5
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 1.8e-14 84.7 89 46.1
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 1.3e-12 78.6 52 61.5
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 1.9e-11 74.7 78 51.3
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 2.7e-10 70.9 42 71.4
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 1.4e-09 68.6 42 69.0
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 2.0e-08 64.7 44 65.9
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 6.3e-07 59.7 102 34.3
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 1.4e-06 58.5 102 34.3
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.4e-06 58.5 37 62.2
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 4.1e-06 57.0 102 34.3


User provided reference genes

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