Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 0.0e+00 4026.5 2120 100.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 0.0e+00 3513.8 2127 88.8
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 0.0e+00 2960.6 2167 76.8
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 0.0e+00 2151.3 1971 64.2
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.9e-237 827.8 2136 35.9
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.6e-229 799.7 2083 36.4
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 5.2e-227 793.1 2246 36.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.6e-210 737.6 2120 35.3
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 1.5e-202 711.8 2254 33.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 7.1e-184 649.8 2163 33.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 5.8e-178 630.2 2155 32.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.0e-175 620.2 2138 32.8
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 4.3e-173 614.0 2074 33.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 5.7e-173 613.6 2090 32.2
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.8e-171 608.6 2136 33.0
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.7e-169 602.1 2141 31.5
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 3.8e-169 600.9 2144 30.4
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.2e-168 597.8 2124 32.3
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 7.9e-167 593.2 1977 32.4
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.4e-166 592.4 2056 32.9
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.0e-166 591.3 2130 32.3
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 8.8e-166 589.7 2160 31.9
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.4e-163 582.4 2193 33.2
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.1e-163 580.9 1930 33.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 9.1e-163 579.7 2127 32.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.2e-160 571.2 2138 31.9
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.4e-155 555.8 2107 31.9
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.4e-155 555.8 1923 31.9
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.2e-154 552.7 2080 31.6
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.3e-153 549.3 1834 35.2
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.2e-151 542.7 1968 31.8
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.7e-151 541.6 928 44.7
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.3e-150 538.5 2065 31.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 2.3e-150 538.5 1903 32.6
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 8.8e-150 536.6 2080 31.4
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.4e-147 528.5 815 49.7
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.0e-146 525.4 1955 32.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 9.4e-144 516.5 2146 31.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.7e-143 515.0 2152 31.4
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.7e-143 514.2 1988 31.6
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 9.7e-141 506.5 2187 30.2
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.1e-139 503.1 1186 39.3
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.1e-139 503.1 2260 30.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 4.1e-139 501.1 2095 30.4
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 4.1e-139 501.1 2206 31.0
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.6e-138 499.2 2160 30.9
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.0e-138 498.8 2005 31.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.9e-138 497.3 2171 30.9
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.9e-137 495.0 2002 31.6
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 3.2e-136 491.5 2163 30.5
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.2e-135 489.6 1951 31.2
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.7e-130 471.9 803 46.5
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.3e-129 469.5 884 40.5
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.3e-126 458.8 723 47.4
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 6.8e-126 457.2 789 46.4
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.4e-125 454.9 1061 40.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 7.8e-122 443.7 1102 38.6
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 6.6e-121 440.7 1030 38.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 8.6e-121 440.3 889 42.7
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 3.6e-119 434.9 1959 31.2
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.5e-117 429.5 796 44.1
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.1e-112 413.3 1936 29.2
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.2e-109 403.3 2066 30.0
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 2.6e-109 402.1 464 59.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.1e-107 396.7 954 38.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 9.2e-107 393.7 890 41.6
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 3.0e-105 388.7 1909 30.1
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 3.3e-104 385.2 788 42.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.6e-103 382.9 2124 27.7
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.1e-102 380.2 1012 37.0
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-102 379.8 757 41.9
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.0e-102 378.3 1984 29.3
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.0e-101 375.9 1988 28.5
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 3.4e-101 375.2 2063 28.6
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 4.4e-101 374.8 1988 28.5
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 4.4e-101 374.8 788 40.7
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 4.9e-100 371.3 1795 28.5
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.4e-99 369.8 745 40.9
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.4e-99 367.9 779 41.2
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 4.6e-98 364.8 692 43.4
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.0e-98 364.4 1014 36.5
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.3e-97 362.5 984 38.8
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.5e-96 359.8 914 37.6
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 9.6e-96 357.1 1139 34.4
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 8.1e-95 354.0 2005 27.3
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-94 353.6 706 42.5
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.1e-94 353.6 787 38.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.1e-94 352.1 787 38.9
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.1e-94 352.1 817 40.8
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.0e-94 351.7 785 40.4
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 3.4e-93 348.6 819 40.3
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 7.6e-93 347.4 1891 29.2
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.3e-92 346.7 877 37.4
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.4e-91 343.2 815 37.2
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.4e-91 343.2 815 37.2
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.4e-91 343.2 814 40.2
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 7.8e-90 337.4 2061 28.2
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 3.0e-89 335.5 537 47.7
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.4e-86 326.6 487 50.3
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 6.9e-86 324.3 987 34.1
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.2e-84 319.3 786 34.9
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 3.8e-84 318.5 895 35.6
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.5e-80 306.6 2101 24.9
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.5e-80 305.8 1950 25.9
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 2.6e-77 295.8 770 38.3
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 5.1e-73 281.6 658 35.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.0e-65 257.3 1040 30.9
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.9e-65 255.4 495 37.4
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 9.6e-64 250.8 280 62.9
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 9.6e-64 250.8 323 55.1
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.5e-61 243.4 807 35.3
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 1.9e-56 226.5 695 30.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.5e-53 215.3 261 48.3
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.3e-47 197.2 486 40.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.7e-39 170.2 1817 25.0
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.2e-39 169.9 194 50.5
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.2e-34 154.1 859 25.4
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.7e-34 152.1 131 61.1
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 3.0e-33 149.4 212 59.0
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.0e-33 149.1 1522 23.7
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 2.6e-32 146.4 105 69.5
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.8e-30 140.2 383 33.4
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.6e-29 137.1 812 29.2
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 3.5e-29 136.0 526 33.3
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 4.5e-29 135.6 219 38.8
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 9.8e-24 117.9 141 47.5
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.7e-23 117.1 892 25.8
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.3e-20 107.5 152 44.1
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-17 97.4 339 33.0
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.4e-17 97.4 237 32.1
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.8e-14 87.0 70 70.0
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 8.6e-12 78.2 1588 23.3
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.5e-11 76.6 151 35.8
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 2.1e-10 73.6 378 27.2
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 7.5e-08 65.1 136 34.6
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 3.2e-06 59.7 92 39.1


User provided reference genes

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