Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G018470 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.5e-37 159.1 82 100.0
CsaV3_1G025570 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-15 86.3 54 87.0
CsaV3_3G032900 Cucumis sativus L. HOM05D004380 ORTHO05D005134 6.9e-11 70.5 35 94.3
CsaV3_1G026630 Cucumis sativus L. HOM05D004380 ORTHO05D005134 9.0e-11 70.1 35 94.3
CsaV3_UNG068570 Cucumis sativus L. HOM05D004380 ORTHO05D005134 2.6e-10 68.6 35 91.4
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 6.5e-09 63.9 36 83.3
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 6.5e-09 63.9 36 83.3
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 6.5e-09 63.9 36 83.3
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 7.1e-08 60.5 36 77.8
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 9.3e-08 60.1 36 75.0
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.2e-07 59.7 36 75.0
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 72.2
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 72.2
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 72.2
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 72.2
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 72.2
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 72.2
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.6e-07 59.3 36 75.0
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 2.1e-07 58.9 36 75.0
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.1e-07 58.9 36 72.2
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.7e-07 58.5 37 70.3
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.7e-07 58.5 36 72.2
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.7e-07 58.5 36 72.2
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 2.7e-07 58.5 34 79.4
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.5e-07 58.2 36 69.4
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 3.5e-07 58.2 36 69.4
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 3.5e-07 58.2 36 69.4
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.5e-07 58.2 36 69.4
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 4.6e-07 57.8 36 72.2
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 4.6e-07 57.8 36 69.4
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 4.6e-07 57.8 36 72.2
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 6.1e-07 57.4 36 69.4
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 6.1e-07 57.4 35 74.3
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 6.1e-07 57.4 35 74.3
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.1e-07 57.4 36 69.4
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.1e-07 57.4 35 74.3
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 6.1e-07 57.4 36 72.2
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 6.1e-07 57.4 36 72.2
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.9e-07 57.0 37 78.4
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 7.9e-07 57.0 35 74.3
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 7.9e-07 57.0 36 69.4
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.0e-06 56.6 36 69.4
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.0e-06 56.6 36 69.4
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.0e-06 56.6 36 72.2
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.0e-06 56.6 36 72.2
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.3e-06 56.2 36 72.2
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.3e-06 56.2 36 72.2
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.3e-06 56.2 37 70.3
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.8e-06 55.8 36 69.4
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.8e-06 55.8 36 69.4
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.8e-06 55.8 36 69.4
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 2.3e-06 55.5 36 69.4
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.3e-06 55.5 36 69.4
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.3e-06 55.5 36 69.4
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.3e-06 55.5 34 73.5
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.3e-06 55.5 34 73.5
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 3.0e-06 55.1 37 70.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 3.9e-06 54.7 36 66.7
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 3.9e-06 54.7 36 69.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 5.1e-06 54.3 36 69.4
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 5.1e-06 54.3 38 68.4
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 5.1e-06 54.3 36 66.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 5.1e-06 54.3 36 66.7
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 6.7e-06 53.9 36 66.7
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 6.7e-06 53.9 36 66.7
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 8.7e-06 53.5 36 66.7
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 8.7e-06 53.5 36 66.7
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 8.7e-06 53.5 36 66.7


User provided reference genes

Program Settings