Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G012760 Cucumis sativus L. HOM05D001954 ORTHO05D001966 2.2e-67 258.8 131 100.0
CsaV3_6G027380 Cucumis sativus L. HOM05D001954 ORTHO05D001966 6.4e-67 257.3 131 99.2
CsaV3_7G016110 Cucumis sativus L. HOM05D001954 ORTHO05D001966 6.4e-67 257.3 131 99.2
CsaV3_7G018840 Cucumis sativus L. HOM05D001954 ORTHO05D001966 6.4e-67 257.3 131 99.2
CsaV3_7G019860 Cucumis sativus L. HOM05D001954 ORTHO05D001966 6.4e-67 257.3 131 99.2
CsaV3_UNG001020 Cucumis sativus L. HOM05D001954 ORTHO05D001966 6.4e-67 257.3 131 99.2
CsaV3_UNG226790 Cucumis sativus L. HOM05D001954 ORTHO05D001966 6.4e-67 257.3 131 99.2
CsaV3_6G027390 Cucumis sativus L. HOM05D001954 ORTHO05D001966 2.0e-65 252.3 131 97.7
MELO3C013107.2 Cucumis melo HOM05D001954 ORTHO05D001966 5.0e-64 247.7 132 97.0
ClCG09G020910 Citrullus lanatus HOM05D001954 ORTHO05D001966 5.8e-52 207.6 148 74.3
Sed0021038 Sechium edule HOM05D001954 ORTHO05D001966 1.7e-48 196.1 148 70.9
CsaV3_7G018830 Cucumis sativus L. HOM05D001954 ORTHO05D001966 4.7e-46 188.0 108 93.5
CsaV3_UNG180380 Cucumis sativus L. HOM05D001954 ORTHO05D001966 1.5e-44 183.0 97 99.0
Sed0014590 Sechium edule HOM05D001954 ORTHO05D001966 3.3e-39 165.2 123 72.4
Thecc.07G025200 Theobroma cacao HOM05D001954 ORTHO05D001966 3.9e-32 141.7 100 72.0
TAR626G0247 Trochodendron aralioides HOM05D001954 ORTHO05D001966 3.3e-31 138.7 102 63.7
Duzib213G0929 Durio zibethinus HOM05D001954 ORTHO05D001966 9.6e-31 137.1 100 69.0
THA.LOC104811641 Tarenaya hassleriana HOM05D001954 ORTHO05D001966 2.1e-30 136.0 100 68.0
Manes.15G064900 Manihot esculenta HOM05D001954 ORTHO05D001966 1.8e-29 132.9 146 51.4
Prupe.4G227500 Prunus persica HOM05D001954 ORTHO05D001966 2.4e-29 132.5 91 69.2
Sabra16G0237500 Salix brachista HOM05D001954 ORTHO05D001966 3.1e-29 132.1 133 56.4
Dinv40816 Davidia involucrata HOM05D001954 ORTHO05D001966 1.2e-28 130.2 91 65.9
Cpa.g.sc12.225 Carica papaya HOM05D001954 ORTHO05D001966 2.0e-28 129.4 93 65.6
Gohir.D01G071700 Gossypium hirsutum HOM05D001954 ORTHO05D001966 2.0e-28 129.4 96 65.6
QL08p008163 Quercus lobata HOM05D001954 ORTHO05D001966 2.0e-28 129.4 125 56.0
TAR624G0479 Trochodendron aralioides HOM05D001954 ORTHO05D001966 2.0e-28 129.4 96 63.5
Cfa020260 Carpinus fangiana HOM05D001954 ORTHO05D001966 2.6e-28 129.0 91 71.4
Haze_09760 Corylus avellana HOM05D001954 ORTHO05D001966 2.6e-28 129.0 91 71.4
Potri.001G359900 Populus trichocarpa HOM05D001954 ORTHO05D001966 2.6e-28 129.0 124 53.2
Gorai.002G094500 Gossypium raimondii HOM05D001954 ORTHO05D001966 1.3e-27 126.7 96 64.6
CiPaw.11G196400 Carya illinoinensis HOM05D001954 ORTHO05D001966 1.7e-27 126.3 100 60.0
MD11G1208000 Malus domestica HOM05D001954 ORTHO05D001966 2.2e-27 125.9 91 65.9
Medtr3g055370 Medicago truncatula HOM05D001954 ORTHO05D001966 2.9e-27 125.6 91 69.2
GSVIVG01037749001 Vitis vinifera HOM05D001954 ORTHO05D001966 2.9e-27 125.6 134 52.2
Gohir.A01G085300 Gossypium hirsutum HOM05D001954 ORTHO05D001966 3.8e-27 125.2 96 63.5
TWI38G0084 Tripterygium wilfordii HOM05D001954 ORTHO05D001966 6.4e-27 124.4 91 62.6
Hma1.2p1_0036F.1_g023000 Hydrangea macrophylla HOM05D001954 ORTHO05D001966 1.1e-26 123.6 99 58.6
Actinidia10757 Actinidia chinensis HOM05D001954 ORTHO05D001966 1.4e-26 123.2 99 58.6
CSS0027165 Camellia sinensis var. sinensis HOM05D001954 ORTHO05D001966 2.4e-26 122.5 129 48.8
FAN16G1485 Fragaria x ananassa HOM05D001954 ORTHO05D001966 2.4e-26 122.5 107 58.9
FAN21G1060 Fragaria x ananassa HOM05D001954 ORTHO05D001966 5.5e-26 121.3 107 57.9
TPR.G23605 Trifolium pratense HOM05D001954 ORTHO05D001966 5.5e-26 121.3 91 65.9
Ciclev10007252m.g Citrus clementina HOM05D001954 ORTHO05D001966 7.1e-26 120.9 92 62.0
DCAR_001613 Daucus carota HOM05D001954 ORTHO05D001966 7.1e-26 120.9 108 54.6
FvH4_3g23690 Fragaria vesca HOM05D001954 ORTHO05D001966 7.1e-26 120.9 107 57.9
FAN11G3646 Fragaria x ananassa HOM05D001954 ORTHO05D001966 7.1e-26 120.9 107 57.9
Glyma.18G086000 Glycine max HOM05D001954 ORTHO05D001966 1.2e-25 120.2 123 55.3
RcHm_v2.0_Chr5g0041831 Rosa chinensis HOM05D001954 ORTHO05D001966 1.2e-25 120.2 91 65.9
Atru.chr2.3581 Acer truncatum HOM05D001954 ORTHO05D001966 1.6e-25 119.8 92 63.0
Phvul.006G049800 Phaseolus vulgaris HOM05D001954 ORTHO05D001966 1.6e-25 119.8 105 60.0
Sc16g0005350 Simmondsia chinensis HOM05D001954 ORTHO05D001966 2.1e-25 119.4 111 55.9
FAN25G2767 Fragaria x ananassa HOM05D001954 ORTHO05D001966 2.7e-25 119.0 91 62.6
Lj8A174G72 Lonicera japonica HOM05D001954 ORTHO05D001966 2.7e-25 119.0 92 62.0
Ca_14774_v3 Cicer arietinum L. HOM05D001954 ORTHO05D001966 3.5e-25 118.6 91 64.8
Lalb_Chr18g0050351 Lupinus albus HOM05D001954 ORTHO05D001966 3.5e-25 118.6 91 63.7
PGR031G2509 Punica granatum HOM05D001954 ORTHO05D001966 3.5e-25 118.6 91 60.4
MD11G1207800 Malus domestica HOM05D001954 ORTHO05D001966 6.0e-25 117.9 92 60.9
CDE02G3241 Ceratophyllum demersum HOM05D001954 ORTHO05D001966 1.0e-24 117.1 109 50.5
CDE04G1524 Ceratophyllum demersum HOM05D001954 ORTHO05D001966 1.0e-24 117.1 109 50.5
MD03G1191000 Malus domestica HOM05D001954 ORTHO05D001966 1.3e-24 116.7 93 63.4
Lj6g0026788 Lotus japonicus HOM05D001954 ORTHO05D001966 2.3e-24 115.9 124 54.8
Nn1g07384 Nelumbo nucifera HOM05D001954 ORTHO05D001966 3.0e-24 115.5 102 53.9
Psat5g172680 Pisum sativum HOM05D001954 ORTHO05D001966 3.0e-24 115.5 100 58.0
Rhsim06G0224600 Rhododendron simsii HOM05D001954 ORTHO05D001966 3.0e-24 115.5 120 48.3
CiPaw.12G134800 Carya illinoinensis HOM05D001954 ORTHO05D001966 3.9e-24 115.2 91 62.6
CARHR268730 Cardamine hirsuta HOM05D001954 ORTHO05D001966 5.1e-24 114.8 100 57.0
Phvul.008G273400 Phaseolus vulgaris HOM05D001954 ORTHO05D001966 6.7e-24 114.4 91 59.3
SHI26564 Sapria himalayana HOM05D001954 ORTHO05D001966 1.1e-23 113.6 91 56.0
Prupe.4G227700 Prunus persica HOM05D001954 ORTHO05D001966 1.5e-23 113.2 91 58.2
Aqoxy7G01880 Aquilegia oxysepala HOM05D001954 ORTHO05D001966 3.3e-23 112.1 96 52.1
COL.COLO4_09751 Corchorus olitorius HOM05D001954 ORTHO05D001966 9.6e-23 110.5 91 62.6
Dinv07830 Davidia involucrata HOM05D001954 ORTHO05D001966 1.3e-22 110.2 102 54.9
Rhsim04G0016000 Rhododendron simsii HOM05D001954 ORTHO05D001966 1.3e-22 110.2 103 48.5
VMungo0540G1297 Vigna mungo HOM05D001954 ORTHO05D001966 2.1e-22 109.4 101 57.4
C02p16160 Brassica napus HOM05D001954 ORTHO05D001966 3.7e-22 108.6 100 56.0
BraA02t06033Z Brassica rapa HOM05D001954 ORTHO05D001966 4.8e-22 108.2 100 55.0
Thhalv10012452m.g Eutrema salsugineum HOM05D001954 ORTHO05D001966 4.8e-22 108.2 123 50.4
vmacro11577 Vaccinium macrocarpon HOM05D001954 ORTHO05D001966 4.8e-22 108.2 132 44.7
A02p09690 Brassica napus HOM05D001954 ORTHO05D001966 6.2e-22 107.8 100 56.0
Oeu057072.1 Olea europaea HOM05D001954 ORTHO05D001966 6.2e-22 107.8 123 43.1
Carub.0008s1573 Capsella rubella HOM05D001954 ORTHO05D001966 8.1e-22 107.5 101 57.4
Cc05_g14470 Coffea canephora HOM05D001954 ORTHO05D001966 8.1e-22 107.5 120 44.2
BolC2t07721H Brassica oleracea HOM05D001954 ORTHO05D001966 1.1e-21 107.1 119 47.9
RcHm_v2.0_Chr4g0405241 Rosa chinensis HOM05D001954 ORTHO05D001966 1.1e-21 107.1 90 55.6
Eucgr.F03513 Eucalyptus grandis HOM05D001954 ORTHO05D001966 1.4e-21 106.7 91 54.9
Glyma.02G296200 Glycine max HOM05D001954 ORTHO05D001966 1.4e-21 106.7 91 56.0
arahy.Tifrunner.gnm1.ann1.N4IY81 Arachis hypogaea HOM05D001954 ORTHO05D001966 1.8e-21 106.3 115 51.3
CSS0036878 Camellia sinensis var. sinensis HOM05D001954 ORTHO05D001966 1.8e-21 106.3 80 62.5
AT5G55390 Arabidopsis thaliana HOM05D001954 ORTHO05D001966 2.4e-21 105.9 101 55.4
Lj1A882G74 Lonicera japonica HOM05D001954 ORTHO05D001966 2.4e-21 105.9 125 45.6
AL8G30940 Arabidopsis lyrata HOM05D001954 ORTHO05D001966 4.0e-21 105.1 101 57.4
Aqoxy7G01021 Aquilegia oxysepala HOM05D001954 ORTHO05D001966 6.9e-21 104.4 91 59.3
Lsat_1_v5_gn_5_185161 Lactuca sativa HOM05D001954 ORTHO05D001966 2.0e-20 102.8 117 47.9
arahy.Tifrunner.gnm1.ann1.WE4INQ Arachis hypogaea HOM05D001954 ORTHO05D001966 2.6e-20 102.4 115 50.4
Hma1.2p1_0133F.1_g060970 Hydrangea macrophylla HOM05D001954 ORTHO05D001966 5.8e-20 101.3 124 44.4
GSVIVG01030413001 Vitis vinifera HOM05D001954 ORTHO05D001966 5.8e-20 101.3 134 44.0
Aa31LG3G11390 Aethionema arabicum HOM05D001954 ORTHO05D001966 7.6e-20 100.9 104 51.0
Solyc10g006090.4 Solanum lycopersicum HOM05D001954 ORTHO05D001966 1.7e-19 99.8 100 53.0
Ciclev10014864m.g Citrus clementina HOM05D001954 ORTHO05D001966 2.2e-19 99.4 91 52.7
Sp6g17310 Schrenkiella parvula HOM05D001954 ORTHO05D001966 2.2e-19 99.4 100 51.0
HanXRQChr05g0159601 Helianthus annuus HOM05D001954 ORTHO05D001966 4.9e-19 98.2 93 54.8
MBI19_g07875_MAGBIO Magnolia biondii HOM05D001954 ORTHO05D001966 4.9e-19 98.2 124 40.3
Sopen10g002040 Solanum pennellii HOM05D001954 ORTHO05D001966 6.5e-19 97.8 127 44.9
ECA246G3961 Erigeron canadensis HOM05D001954 ORTHO05D001966 8.4e-19 97.4 93 50.5
Nitab4.5_0004445g0010 Nicotiana tabacum HOM05D001954 ORTHO05D001966 8.4e-19 97.4 131 43.5
MSTRG.15775 Avicennia marina HOM05D001954 ORTHO05D001966 4.2e-18 95.1 93 53.8
ATR0712G104 Amborella trichopoda HOM05D001954 ORTHO05D001966 5.5e-18 94.7 101 46.5
CANSAT11G0890 Cannabis sativa HOM05D001954 ORTHO05D001966 9.3e-18 94.0 131 44.3
CAN.G492.26 Capsicum annuum HOM05D001954 ORTHO05D001966 9.3e-18 94.0 100 51.0
Nitab4.5_0001393g0050 Nicotiana tabacum HOM05D001954 ORTHO05D001966 1.2e-17 93.6 129 43.4
Lj8A132T58 Lonicera japonica HOM05D001954 ORTHO05D001966 2.1e-17 92.8 100 48.0
PSO541G0677 Papaver somniferum HOM05D001954 ORTHO05D001966 3.5e-17 92.0 91 49.5
PSO675G7966 Papaver somniferum HOM05D001954 ORTHO05D001966 6.0e-17 91.3 91 49.5
Migut.M01697 Erythranthe guttata HOM05D001954 ORTHO05D001966 1.3e-16 90.1 121 40.5
Sopen10g022850 Solanum pennellii HOM05D001954 ORTHO05D001966 1.8e-16 89.7 92 45.7
Solyc10g051140.3 Solanum lycopersicum HOM05D001954 ORTHO05D001966 2.3e-16 89.4 92 45.7
HanXRQChr02g0038491 Helianthus annuus HOM05D001954 ORTHO05D001966 3.0e-16 89.0 126 38.9
TWI36G0094 Tripterygium wilfordii HOM05D001954 ORTHO05D001966 3.0e-16 89.0 90 46.7
vmacro09379 Vaccinium macrocarpon HOM05D001954 ORTHO05D001966 3.0e-16 89.0 91 49.5
Actinidia35378 Actinidia chinensis HOM05D001954 ORTHO05D001966 5.1e-16 88.2 84 50.0
BcaB05g22207 Brassica carinata HOM05D001954 ORTHO05D001966 5.1e-16 88.2 100 49.0
CANSAT11G1908 Cannabis sativa HOM05D001954 ORTHO05D001966 6.7e-16 87.8 106 46.2
DCAR_013202 Daucus carota HOM05D001954 ORTHO05D001966 6.7e-16 87.8 100 47.0
CANSAT64G0419 Cannabis sativa HOM05D001954 ORTHO05D001966 1.1e-15 87.0 89 48.3
SalBow8G5431 Salvia bowleyana HOM05D001954 ORTHO05D001966 1.5e-15 86.7 91 49.5
Ca_18082_v3 Cicer arietinum L. HOM05D001954 ORTHO05D001966 1.9e-15 86.3 143 35.0
Lj3g0017925 Lotus japonicus HOM05D001954 ORTHO05D001966 1.9e-15 86.3 122 34.4
Duzib138G0658 Durio zibethinus HOM05D001954 ORTHO05D001966 4.3e-15 85.1 104 43.3
QL08p029610 Quercus lobata HOM05D001954 ORTHO05D001966 5.7e-15 84.7 99 44.4
Gohir.A11G151300 Gossypium hirsutum HOM05D001954 ORTHO05D001966 7.4e-15 84.3 124 37.1
Lsat_1_v5_gn_9_105420 Lactuca sativa HOM05D001954 ORTHO05D001966 7.4e-15 84.3 93 45.2
Gorai.007G168700 Gossypium raimondii HOM05D001954 ORTHO05D001966 9.6e-15 84.0 93 46.2
Peaxi162Scf00076g01046 Petunia axillaris HOM05D001954 ORTHO05D001966 9.6e-15 84.0 102 39.2
HanXRQChr08g0233661 Helianthus annuus HOM05D001954 ORTHO05D001966 2.1e-14 82.8 81 50.6
Rhsim04G0045900 Rhododendron simsii HOM05D001954 ORTHO05D001966 2.1e-14 82.8 90 45.6
Psat4g222000 Pisum sativum HOM05D001954 ORTHO05D001966 2.8e-14 82.4 100 38.0
Lalb_Chr00c48g0412871 Lupinus albus HOM05D001954 ORTHO05D001966 3.7e-14 82.0 92 51.1
Lalb_Chr04g0248091 Lupinus albus HOM05D001954 ORTHO05D001966 3.7e-14 82.0 92 51.1
PSO478G1850 Papaver somniferum HOM05D001954 ORTHO05D001966 3.7e-14 82.0 119 37.8
Medtr8g009000 Medicago truncatula HOM05D001954 ORTHO05D001966 4.8e-14 81.6 89 41.6
Nitab4.5_0001361g0170 Nicotiana tabacum HOM05D001954 ORTHO05D001966 4.8e-14 81.6 102 42.2
Atru.chr6.3317 Acer truncatum HOM05D001954 ORTHO05D001966 8.2e-14 80.9 100 38.0
Peaxi162Scf00207g00231 Petunia axillaris HOM05D001954 ORTHO05D001966 1.1e-13 80.5 124 41.1
Oeu034542.1 Olea europaea HOM05D001954 ORTHO05D001966 3.1e-13 79.0 100 38.0
SGA_v2.0_scaffold171G38903 Striga asiatica HOM05D001954 ORTHO05D001966 3.1e-13 79.0 91 40.7
TPR.G32124 Trifolium pratense HOM05D001954 ORTHO05D001966 4.1e-13 78.6 89 40.4
Hund24357 Selenicereus undatus HOM05D001954 ORTHO05D035139 6.9e-13 77.8 90 45.6
Zm00001eb094550 Zea mays HOM05D001954 ORTHO05D001966 9.0e-13 77.4 96 42.7
Cc00_g04660 Coffea canephora HOM05D001954 ORTHO05D001966 1.2e-12 77.0 90 43.3
Migut.M00007 Erythranthe guttata HOM05D001954 ORTHO05D001966 1.5e-12 76.6 137 34.3
arahy.Tifrunner.gnm1.ann1.654JSI Arachis hypogaea HOM05D001954 ORTHO05D001966 2.0e-12 76.3 91 37.4
EL10Ac4g07647 Beta vulgaris HOM05D001954 ORTHO05D001966 2.0e-12 76.3 95 43.2
PSO782G1453 Papaver somniferum HOM05D001954 ORTHO05D001966 2.0e-12 76.3 103 36.9
PGR042G2351 Punica granatum HOM05D001954 ORTHO05D001966 2.0e-12 76.3 99 37.4
Hund01939 Selenicereus undatus HOM05D001954 ORTHO05D001966 2.6e-12 75.9 91 41.8
EL10Ac3g05659 Beta vulgaris HOM05D001954 ORTHO05D001966 3.4e-12 75.5 102 38.2
TPR.G25090 Trifolium pratense HOM05D001954 ORTHO05D001966 3.4e-12 75.5 84 39.3
Cc00_g04650 Coffea canephora HOM05D001954 ORTHO05D001966 4.5e-12 75.1 128 35.9
unitig_85.g27335 Utricularia gibba HOM05D001954 ORTHO05D001966 4.5e-12 75.1 91 44.0
Thecc.01G186400 Theobroma cacao HOM05D001954 ORTHO05D001966 5.9e-12 74.7 103 42.7
Lalb_Chr21g0317071 Lupinus albus HOM05D001954 ORTHO05D001966 2.2e-11 72.8 109 35.8
Sc21g0001000 Simmondsia chinensis HOM05D001954 ORTHO05D001966 2.2e-11 72.8 91 38.5
ECA240G2091 Erigeron canadensis HOM05D001954 ORTHO05D001966 3.8e-11 72.0 65 53.8
Os08g0502000 Oryza sativa ssp. japonica HOM05D001954 ORTHO05D001966 5.0e-11 71.6 96 41.7
COL.COLO4_35988 Corchorus olitorius HOM05D001954 ORTHO05D001966 1.1e-10 70.5 103 38.8
VMungo0331G1005 Vigna mungo HOM05D001954 ORTHO05D001966 1.4e-10 70.1 90 35.6
DCAR_019722 Daucus carota HOM05D001954 ORTHO05D001966 1.9e-10 69.7 116 33.6
Peaxi162Scf00038g01446 Petunia axillaris HOM05D001954 ORTHO05D001966 2.5e-10 69.3 100 44.0
Peaxi162Scf00073g01932 Petunia axillaris HOM05D001954 ORTHO05D001966 3.2e-10 68.9 100 43.0
Oeu019629.1 Olea europaea HOM05D001954 ORTHO05D001966 4.2e-10 68.6 59 52.5
Phvul.010G042800 Phaseolus vulgaris HOM05D001954 ORTHO05D001966 4.2e-10 68.6 90 34.4
AUR62024755 Chenopodium quinoa HOM05D001954 ORTHO05D001966 5.5e-10 68.2 92 42.4
Gohir.D11G158200 Gossypium hirsutum HOM05D001954 ORTHO05D001966 5.5e-10 68.2 84 44.0
arahy.Tifrunner.gnm1.ann1.A7SCBY Arachis hypogaea HOM05D001954 ORTHO05D001966 9.3e-10 67.4 102 32.4
Glyma.03G105200 Glycine max HOM05D001954 ORTHO05D001966 1.6e-09 66.6 135 34.1
COL.COLO4_35987 Corchorus olitorius HOM05D001954 ORTHO05D001966 3.5e-09 65.5 102 40.2
Zm00001eb199620 Zea mays HOM05D001954 ORTHO05D001966 3.5e-09 65.5 91 38.5
SalBow7G4175 Salvia bowleyana HOM05D001954 ORTHO05D001966 6.1e-09 64.7 127 33.9
AUR62015915 Chenopodium quinoa HOM05D001954 ORTHO05D001966 2.3e-08 62.8 92 37.0
Actinidia10784 Actinidia chinensis HOM05D001954 ORTHO05D001966 3.0e-08 62.4 46 60.9
Ah.14g082940 Amaranthus hybridus HOM05D001954 ORTHO05D001966 3.0e-08 62.4 91 38.5
SGA_v2.0_scaffold73G24529 Striga asiatica HOM05D001954 ORTHO05D001966 3.9e-08 62.0 84 39.3
VMungo0647G0842 Vigna mungo HOM05D001954 ORTHO05D001966 3.9e-08 62.0 91 44.0
HPP92_004668 Vanilla planifolia HOM05D001954 ORTHO05D001966 5.1e-08 61.6 70 47.1
AUR62015096 Chenopodium quinoa HOM05D001954 ORTHO05D001966 2.2e-06 56.2 91 36.3
Lalb_Chr00c48g0413041 Lupinus albus HOM05D001954 ORTHO05D001966 6.3e-06 54.7 92 35.9


User provided reference genes

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