Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 2.9e-89 332.0 185 100.0
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 5.2e-83 311.2 191 91.6
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 1.5e-69 266.5 199 81.4
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 4.2e-56 221.9 191 66.5
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 8.5e-33 144.4 111 64.9
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 1.2e-31 140.6 155 57.4
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 7.9e-31 137.9 159 54.7
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 7.9e-31 137.9 109 64.2
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 1.0e-30 137.5 136 58.1
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.4e-30 137.1 143 56.6
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 1.8e-30 136.7 108 62.0
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 6.7e-30 134.8 152 52.0
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 2.6e-29 132.9 152 52.0
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 3.3e-29 132.5 99 63.6
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 3.3e-29 132.5 99 64.6
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 5.7e-29 131.7 149 52.3
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 9.7e-29 131.0 101 63.4
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 9.7e-29 131.0 101 65.3
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 1.3e-28 130.6 96 63.5
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.2e-28 129.8 99 61.6
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.2e-28 129.8 97 62.9
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.2e-28 129.8 99 61.6
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 2.8e-28 129.4 98 63.3
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 2.8e-28 129.4 178 50.0
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 2.8e-28 129.4 108 60.2
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 3.7e-28 129.0 149 55.0
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 3.7e-28 129.0 99 63.6
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 4.8e-28 128.6 108 62.0
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 6.3e-28 128.3 202 47.5
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 8.2e-28 127.9 182 50.0
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 1.1e-27 127.5 99 65.7
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 1.4e-27 127.1 170 48.8
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 1.8e-27 126.7 162 53.7
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 1.8e-27 126.7 99 60.6
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 2.4e-27 126.3 99 63.6
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 2.4e-27 126.3 160 51.2
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 3.1e-27 125.9 99 62.6
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 3.1e-27 125.9 176 49.4
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 3.1e-27 125.9 154 52.6
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 4.1e-27 125.6 102 59.8
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 4.1e-27 125.6 126 60.3
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 4.1e-27 125.6 126 60.3
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 5.3e-27 125.2 94 64.9
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 7.0e-27 124.8 181 48.1
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 7.0e-27 124.8 166 53.0
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 7.0e-27 124.8 91 67.0
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 9.1e-27 124.4 99 60.6
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 9.1e-27 124.4 176 49.4
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 9.1e-27 124.4 127 58.3
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 1.2e-26 124.0 101 60.4
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 1.6e-26 123.6 98 62.2
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 1.6e-26 123.6 108 57.4
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 3.5e-26 122.5 96 61.5
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 3.5e-26 122.5 99 60.6
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 3.5e-26 122.5 110 60.0
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 3.5e-26 122.5 174 51.1
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 4.5e-26 122.1 99 60.6
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 4.5e-26 122.1 160 53.1
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 5.9e-26 121.7 94 61.7
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 7.7e-26 121.3 139 49.6
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 1.3e-25 120.6 92 64.1
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.3e-25 120.6 99 59.6
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.7e-25 120.2 92 65.2
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.7e-25 120.2 95 62.1
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 2.2e-25 119.8 163 52.1
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 2.2e-25 119.8 108 58.3
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 2.2e-25 119.8 86 66.3
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 2.2e-25 119.8 141 53.9
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 3.8e-25 119.0 99 56.6
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 3.8e-25 119.0 86 69.8
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 3.8e-25 119.0 129 49.6
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 5.0e-25 118.6 88 64.8
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 5.0e-25 118.6 96 58.3
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 5.0e-25 118.6 96 60.4
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 8.5e-25 117.9 160 50.0
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 8.5e-25 117.9 181 51.9
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 8.5e-25 117.9 96 60.4
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 1.1e-24 117.5 89 62.9
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 1.5e-24 117.1 162 50.6
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.5e-24 117.1 89 66.3
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 1.5e-24 117.1 96 56.2
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 1.9e-24 116.7 84 67.9
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 1.9e-24 116.7 101 57.4
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 2.5e-24 116.3 98 59.2
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 3.2e-24 115.9 95 60.0
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 3.2e-24 115.9 127 55.1
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 4.2e-24 115.5 95 60.0
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 4.2e-24 115.5 89 62.9
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 7.2e-24 114.8 96 60.4
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 7.2e-24 114.8 96 60.4
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 7.2e-24 114.8 180 46.1
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 9.4e-24 114.4 91 59.3
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 9.4e-24 114.4 96 55.2
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.7e-23 112.8 74 70.3
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 2.7e-23 112.8 154 52.6
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 3.6e-23 112.5 95 58.9
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 3.6e-23 112.5 90 61.1
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.8e-22 110.2 163 49.1
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 2.3e-22 109.8 157 49.0
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 2.3e-22 109.8 163 46.6
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 3.0e-22 109.4 76 68.4
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 3.0e-22 109.4 76 68.4
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 3.0e-22 109.4 180 44.4
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 4.0e-22 109.0 100 56.0
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 8.8e-22 107.8 76 67.1
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 1.2e-21 107.5 76 65.8
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 1.2e-21 107.5 76 67.1
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 1.5e-21 107.1 160 46.2
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 1.5e-21 107.1 107 53.3
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 2.6e-21 106.3 93 55.9
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 2.6e-21 106.3 80 60.0
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 5.7e-21 105.1 76 67.1
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 5.7e-21 105.1 181 43.6
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 9.7e-21 104.4 96 52.1
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 1.7e-20 103.6 95 52.6
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 2.2e-20 103.2 156 48.1
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 2.2e-20 103.2 174 42.0
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 2.8e-20 102.8 78 61.5
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 3.7e-20 102.4 123 53.7
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 2.4e-19 99.8 93 53.8
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 4.1e-19 99.0 164 41.5
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 5.3e-19 98.6 165 46.1
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 5.3e-19 98.6 165 46.1
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 5.3e-19 98.6 165 46.1
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 5.3e-19 98.6 78 60.3
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 5.3e-19 98.6 83 57.8
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.1e-19 97.8 66 66.7
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 1.2e-18 97.4 84 58.3
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.6e-18 97.1 125 45.6
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 2.0e-18 96.7 165 40.0
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 2.0e-18 96.7 89 51.7
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 2.0e-18 96.7 81 56.8
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.7e-18 96.3 92 53.3
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 2.7e-18 96.3 89 53.9
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 4.5e-18 95.5 84 52.4
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 7.7e-18 94.7 109 43.1
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 1.0e-17 94.4 118 50.0
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.3e-17 94.0 78 60.3
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 2.2e-17 93.2 80 53.8
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 3.8e-17 92.4 80 58.8
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 5.0e-17 92.0 72 61.1
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 1.5e-16 90.5 107 48.6
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 2.5e-16 89.7 100 52.0
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 9.4e-16 87.8 105 48.6
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 1.6e-15 87.0 78 51.3
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 3.6e-15 85.9 103 50.5
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 3.6e-15 85.9 91 51.6
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.7e-15 85.5 105 48.6
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.7e-15 85.5 70 55.7
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.0e-15 84.7 78 55.1
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 8.0e-15 84.7 80 51.2
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 8.0e-15 84.7 88 53.4
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 1.0e-14 84.3 87 55.2
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 1.4e-14 84.0 59 62.7
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 5.2e-14 82.0 58 62.1
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.8e-13 77.8 71 56.3
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.8e-13 77.8 61 62.3
Lalb_Chr18g0060571 Lupinus albus HOM05D000343 ORTHO05D009884 1.7e-12 77.0 72 58.3
Pp3c19_14990 Physcomitrium patens HOM05D000343 ORTHO05D009884 3.7e-12 75.9 101 44.6
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 6.3e-12 75.1 101 43.6
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 1.1e-11 74.3 164 34.1
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 9.1e-11 71.2 160 40.6
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 2.0e-10 70.1 108 43.5
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.5e-10 69.3 54 64.8
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.5e-10 69.3 54 64.8
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.3e-09 66.6 54 63.0
Pp3c16_16360 Physcomitrium patens HOM05D000343 ORTHO05D002777 5.0e-09 65.5 105 40.0
Eucgr.L00192 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.9e-08 63.5 52 61.5
CDE06G1102 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 2.8e-07 59.7 91 37.4
Psat7g098240 Pisum sativum HOM05D000343 ORTHO05D009884 2.8e-07 59.7 52 59.6
CDE07G1800 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 3.6e-07 59.3 91 37.4
SEGI_22608 Sequoiadendron giganteum HOM05D000343 ORTHO05D002777 6.1e-07 58.5 52 53.8
Mapoly0079s0021 Marchantia polymorpha HOM05D000343 ORTHO05D002777 1.4e-06 57.4 150 28.0
Cre10.g424775 Chlamydomonas reinhardtii HOM05D000343 ORTHO05D002777 2.3e-06 56.6 103 37.9
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 3.0e-06 56.2 38 60.5


User provided reference genes

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