Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 0.0e+00 1341.3 715 100.0
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 0.0e+00 1291.9 714 94.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 0.0e+00 1165.2 680 88.4
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.6e-297 1025.8 677 79.9
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 5.9e-284 980.7 683 73.8
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.6e-281 972.6 700 70.6
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 6.2e-281 970.7 684 72.5
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 6.2e-281 970.7 698 70.5
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 9.8e-279 963.4 658 72.3
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.7e-278 962.6 685 71.4
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.3e-274 948.3 664 72.7
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 8.1e-273 943.7 685 70.1
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.8e-272 942.6 683 70.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 5.2e-272 941.0 684 69.6
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 8.9e-272 940.3 660 72.0
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 2.6e-271 938.7 689 69.8
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 3.4e-271 938.3 688 70.2
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 3.4e-271 938.3 688 70.2
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.4e-271 938.3 662 71.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 4.4e-271 937.9 664 70.3
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.5e-271 937.2 662 70.7
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.5e-271 937.2 662 70.7
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 3.7e-270 934.9 687 69.6
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.2e-268 929.9 715 67.3
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 7.8e-268 927.2 682 70.1
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.3e-267 926.4 683 70.7
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 7.3e-266 920.6 656 70.6
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.1e-265 919.1 683 70.0
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.1e-264 916.8 686 68.7
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.3e-264 915.6 685 69.1
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.2e-263 913.3 658 68.7
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.6e-263 912.1 685 67.4
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 6.0e-260 901.0 691 68.3
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 8.6e-259 897.1 685 66.4
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.6e-259 897.1 679 66.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 8.6e-259 897.1 680 66.8
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.9e-258 896.0 662 68.0
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 4.3e-258 894.8 688 65.8
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 2.8e-257 892.1 688 65.8
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.7e-257 891.3 738 64.8
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.1e-256 888.6 683 67.3
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.0e-255 885.9 681 67.3
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 2.6e-255 885.6 685 65.1
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-254 882.9 657 68.9
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 3.8e-254 881.7 685 65.8
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.4e-253 879.0 685 66.4
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 7.1e-253 877.5 678 65.3
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 9.3e-253 877.1 684 65.8
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 1.0e-251 873.6 686 65.0
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.9e-250 869.4 658 67.6
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.5e-250 869.0 681 65.1
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 3.3e-250 868.6 661 66.9
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 5.6e-250 867.8 681 65.3
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 7.3e-250 867.5 685 64.7
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.8e-248 862.8 716 63.4
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 5.3e-248 861.3 684 64.9
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 9.0e-248 860.5 692 64.3
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.5e-247 859.8 718 63.1
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 5.8e-247 857.8 718 63.0
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.2e-246 855.9 679 63.9
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 6.4e-246 854.4 663 65.8
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-244 850.1 684 65.2
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.6e-244 849.7 663 65.5
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 3.7e-241 838.6 692 64.5
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.7e-241 838.6 700 61.7
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.1e-240 837.0 692 64.5
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.4e-240 835.9 682 64.5
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 5.8e-239 831.2 682 64.1
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.2e-238 829.3 657 66.4
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 4.2e-237 825.1 653 65.1
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.2e-236 823.5 628 66.4
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 1.0e-235 820.5 654 64.7
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.0e-235 820.5 657 66.1
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 3.3e-234 815.5 688 62.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 9.6e-234 813.9 679 62.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 3.7e-233 812.0 692 63.2
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 4.8e-233 811.6 580 70.5
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 3.4e-231 805.4 666 64.3
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 3.4e-231 805.4 656 63.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 2.2e-230 802.7 666 64.1
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 6.5e-230 801.2 681 59.9
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 8.4e-230 800.8 666 64.0
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.0e-227 793.9 655 63.8
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 5.1e-227 791.6 655 63.7
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 7.4e-226 787.7 512 75.8
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 7.6e-223 777.7 668 63.0
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 7.6e-223 777.7 668 63.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-220 770.4 676 62.1
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 7.9e-220 767.7 676 62.0
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 5.1e-219 765.0 1008 45.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.5e-215 753.4 645 60.5
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.0e-215 753.1 701 59.8
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.6e-212 743.4 691 59.5
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 6.3e-209 731.5 453 78.4
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 7.2e-205 718.0 653 59.9
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 7.0e-200 701.4 684 54.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 5.0e-198 695.3 512 67.6
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 2.0e-194 683.3 702 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 8.2e-193 677.9 658 54.4
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.4e-192 677.2 831 47.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 7.0e-192 674.9 697 50.9
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.2e-191 674.1 684 56.4
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.7e-185 653.7 519 65.7
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.3e-179 633.3 439 71.5
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 8.6e-166 588.2 424 65.6
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 7.5e-154 548.5 683 43.9
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 9.9e-154 548.1 498 57.8
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 8.3e-153 545.0 579 52.7
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.8e-147 527.3 555 56.2
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 7.6e-138 495.4 726 41.0
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 1.9e-136 490.7 715 41.0
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.4e-120 438.0 450 57.1
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.3e-116 424.9 435 52.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 4.9e-113 412.9 538 41.1
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.4e-113 412.1 405 58.5
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 2.7e-95 354.0 300 61.7
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 6.7e-94 349.4 431 49.7
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 6.1e-87 326.2 658 36.6
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 6.7e-86 322.8 372 51.6
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 3.8e-81 307.0 307 54.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.5e-80 304.3 620 32.7
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.2e-80 303.9 220 70.0
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.3e-70 271.2 351 47.6
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 1.9e-64 251.5 243 58.4
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 7.2e-64 249.6 257 54.1
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 4.7e-63 246.9 264 58.0
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 6.8e-62 243.0 241 53.9
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 8.3e-60 236.1 264 56.4
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 8.3e-60 236.1 264 56.8
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.1e-56 225.7 141 78.7
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 2.1e-55 221.5 130 80.8
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.4e-53 214.2 263 46.4
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 6.4e-52 209.9 186 57.5
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-44 185.7 119 76.5
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 1.4e-43 182.2 233 51.1
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 3.9e-41 174.1 105 76.2
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.1e-38 164.5 120 64.2
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 1.5e-37 162.2 120 67.5
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 5.8e-37 160.2 102 76.5
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 7.5e-37 159.8 102 76.5
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-36 159.1 176 49.4
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 3.7e-36 157.5 149 54.4
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-34 151.4 225 40.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.7e-33 148.7 103 71.8
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.3e-33 148.3 89 76.4
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.3e-33 148.3 89 76.4
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.3e-33 148.3 89 76.4
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 2.5e-32 144.8 107 62.6
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 4.3e-32 144.1 201 44.3
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.6e-32 143.7 85 76.5
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 4.0e-30 137.5 208 39.4
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.8e-30 136.7 79 79.7
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 9.9e-29 132.9 79 78.5
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 9.9e-29 132.9 146 51.4
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 2.4e-27 128.3 104 59.6
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 3.9e-25 120.9 107 60.7
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-22 112.1 70 70.0
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-22 112.1 187 48.1
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 6.4e-20 103.6 72 62.5
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 8.4e-20 103.2 89 62.9
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-19 101.7 62 72.6
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 7.1e-19 100.1 56 78.6
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 1.2e-18 99.4 77 64.9
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-18 99.4 62 72.6
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 3.5e-18 97.8 64 68.8
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 7.8e-18 96.7 57 70.2
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 1.7e-17 95.5 57 68.4
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 2.3e-17 95.1 55 70.9
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-17 94.7 97 51.5
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 5.6e-16 90.5 55 72.7
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 6.2e-15 87.0 50 80.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 6.2e-15 87.0 50 80.0
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 1.4e-14 85.9 98 48.0
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-14 85.9 112 42.9
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.0e-13 82.0 46 80.4
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-13 82.0 63 61.9
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-13 80.5 47 76.6
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 1.3e-12 79.3 60 63.3
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 1.7e-12 79.0 77 54.5
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-10 72.4 197 38.1
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 4.6e-10 70.9 71 57.7
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 4.6e-10 70.9 158 36.1
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 1.0e-09 69.7 142 33.1
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 5.6e-08 63.9 42 69.0
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 7.4e-08 63.5 180 32.8
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 1.6e-07 62.4 36 75.0
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 4.8e-07 60.8 75 48.0


User provided reference genes

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