Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.0e-301 1038.5 581 100.0
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.9e-251 872.5 627 77.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.7e-244 849.4 581 81.4
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.6e-173 613.6 436 74.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.2e-169 598.6 504 66.1
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.9e-148 529.6 482 58.3
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.6e-148 528.5 504 56.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 4.3e-147 525.8 497 56.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.7e-143 513.8 508 55.5
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 3.0e-140 503.1 498 54.8
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 5.0e-140 502.3 527 52.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 8.6e-140 501.5 489 55.8
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.1e-139 501.1 483 56.1
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.9e-139 500.4 499 54.3
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.5e-139 500.0 502 54.4
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.5e-139 500.0 495 53.3
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 3.3e-139 499.6 487 55.4
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.1e-138 496.9 502 54.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.3e-137 493.4 498 54.2
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 5.8e-136 488.8 501 52.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 4.6e-133 479.2 486 53.7
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 4.6e-133 479.2 486 53.7
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 4.6e-133 479.2 495 53.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.8e-133 478.4 497 53.9
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.7e-132 477.2 496 55.0
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.9e-131 473.8 491 53.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.3e-131 473.0 494 53.4
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.1e-130 470.3 496 52.6
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.6e-130 469.5 503 52.3
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.3e-129 466.8 484 54.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.3e-129 466.8 509 52.5
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.8e-128 462.2 465 54.2
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.4e-126 457.6 536 47.8
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.2e-126 456.4 444 54.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.1e-126 456.1 526 49.2
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.4e-126 455.7 492 52.4
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 7.1e-126 455.3 509 50.7
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 9.2e-126 454.9 502 51.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.2e-125 454.5 510 50.0
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.2e-125 454.5 497 50.5
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.6e-125 452.6 510 49.6
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 6.0e-125 452.2 496 50.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.5e-123 447.6 485 49.9
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.6e-122 444.1 482 52.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.1e-122 443.7 497 49.9
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.8e-122 443.4 418 56.5
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.8e-122 443.4 493 49.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 8.1e-122 441.8 499 49.3
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.1e-121 439.9 537 48.2
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 4.0e-121 439.5 540 47.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.6e-120 436.8 506 50.2
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 5.8e-120 435.6 485 49.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 5.8e-120 435.6 479 50.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 5.8e-120 435.6 481 50.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 7.6e-120 435.3 494 50.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.8e-119 433.0 485 49.7
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.4e-119 432.2 417 54.7
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 8.4e-119 431.8 534 47.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.9e-118 430.6 484 50.0
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 9.2e-118 428.3 480 50.0
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.7e-117 426.8 501 49.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.6e-116 422.2 422 53.1
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.5e-115 420.2 481 50.5
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 3.3e-115 419.9 487 48.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 5.6e-115 419.1 478 50.0
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 7.3e-115 418.7 511 47.0
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.2e-114 415.6 426 54.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 8.1e-114 415.2 510 47.5
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.1e-114 415.2 486 48.1
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.4e-112 409.8 512 46.5
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 7.6e-112 408.7 497 48.1
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 4.9e-111 406.0 507 46.9
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 4.9e-111 406.0 517 45.6
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 6.4e-111 405.6 488 46.5
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.1e-110 404.8 555 43.4
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.1e-110 404.8 511 47.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.9e-110 404.1 414 53.1
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.4e-110 403.7 510 45.5
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 7.1e-110 402.1 501 45.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.8e-109 398.7 543 44.2
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 5.6e-107 392.5 506 44.3
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 7.3e-107 392.1 528 44.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 6.2e-106 389.0 541 42.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 5.3e-105 386.0 469 45.0
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 3.8e-103 379.8 499 44.5
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 6.4e-103 379.0 497 43.5
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.1e-102 378.3 480 46.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.1e-101 374.0 456 47.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 6.0e-101 372.5 364 54.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 3.7e-98 363.2 488 41.4
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 9.0e-97 358.6 492 41.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 4.9e-95 352.8 463 42.8
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.9e-94 350.9 487 40.5
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 9.3e-94 348.6 493 41.8
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 2.7e-93 347.1 380 52.9
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.3e-92 344.0 474 40.9
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.5e-91 340.5 483 39.5
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 4.3e-91 339.7 485 38.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 4.3e-91 339.7 485 38.8
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.3e-91 339.7 485 39.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.7e-90 336.7 489 39.3
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.5e-85 320.1 416 46.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.1e-84 316.2 502 38.6
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.8e-81 307.8 475 38.5
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 6.9e-81 305.8 486 38.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 5.0e-79 299.7 483 37.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.4e-76 291.6 483 35.8
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.1e-75 288.5 232 61.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 5.5e-70 269.6 308 51.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 9.4e-70 268.9 317 49.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.8e-68 262.3 357 45.9
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.3e-66 258.5 312 48.7
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.8e-66 256.5 492 34.8
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.6e-64 250.8 328 46.0
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-58 231.9 217 59.0
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.8e-57 228.0 167 62.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 9.1e-57 225.7 320 43.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.2e-54 216.9 285 44.9
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 2.0e-48 198.0 363 38.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.5e-46 191.0 237 40.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.6e-43 181.0 238 40.3
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.4e-43 180.3 283 38.2
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 5.7e-43 179.9 140 60.7
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.3e-42 178.7 283 38.2
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 6.3e-42 176.4 349 34.4
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 4.7e-37 160.2 353 31.7
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 8.0e-37 159.5 231 39.0
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 6.3e-34 149.8 217 38.2
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-33 148.7 276 34.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.3e-30 136.3 87 66.7
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.3e-30 136.3 87 66.7
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.5e-30 136.0 188 45.2
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.4e-25 121.3 130 48.5
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.3e-23 115.5 295 27.5
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-20 105.5 257 28.4
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.2e-20 103.6 146 46.6
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-17 95.9 502 22.9
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-17 95.9 502 22.9
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.1e-17 95.9 502 22.9
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-17 95.5 157 42.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.2e-17 92.8 286 30.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.6e-16 92.0 259 26.3
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.6e-16 92.0 259 26.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.7e-13 80.5 54 63.0
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-06 58.5 71 43.7
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 4.3e-06 57.4 280 24.6
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.3e-06 56.6 71 42.3


User provided reference genes

Program Settings