Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.4e-243 845.9 427 100.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 3.0e-230 801.6 428 95.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.2e-212 743.0 426 88.0
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 5.8e-194 681.0 427 81.0
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 2.2e-169 599.4 422 71.3
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 8.8e-166 587.4 424 69.8
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 2.2e-164 582.8 420 69.3
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.4e-163 580.1 423 70.9
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 1.4e-163 580.1 419 71.6
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.2e-162 577.0 434 67.7
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 2.0e-162 576.2 422 69.4
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 2.6e-162 575.9 379 73.6
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 2.6e-162 575.9 417 70.5
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 2.6e-162 575.9 420 69.5
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 5.9e-162 574.7 418 68.7
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.0e-161 573.9 418 70.1
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.7e-161 573.2 417 69.1
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.5e-161 571.2 417 69.3
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 6.5e-161 571.2 407 69.3
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.5e-161 570.9 381 72.4
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 1.4e-160 570.1 378 75.1
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 3.6e-159 565.5 418 70.1
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 6.1e-159 564.7 379 73.4
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 1.8e-158 563.1 410 67.6
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 3.0e-158 562.4 421 67.7
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.9e-158 562.0 417 69.3
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.9e-158 562.0 417 69.3
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 6.7e-158 561.2 410 67.6
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 8.8e-158 560.8 422 66.6
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.5e-157 560.1 432 65.5
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 7.4e-157 557.8 387 70.5
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 1.1e-155 553.9 415 69.4
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.8e-155 553.1 404 66.8
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 2.4e-155 552.7 428 65.9
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 7.0e-155 551.2 378 69.6
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 9.1e-155 550.8 480 60.8
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 9.1e-155 550.8 419 67.1
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.2e-154 550.4 395 68.9
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 2.6e-154 549.3 415 66.5
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 3.4e-154 548.9 416 66.3
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 3.4e-154 548.9 379 68.9
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 7.7e-154 547.7 413 66.3
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.2e-153 546.2 407 66.3
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.2e-153 546.2 384 70.6
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 2.2e-153 546.2 412 68.0
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.9e-153 545.8 385 68.6
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 3.8e-153 545.4 372 72.6
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 6.5e-153 544.7 378 70.4
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 6.5e-153 544.7 405 67.2
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 8.5e-153 544.3 416 66.1
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 8.5e-153 544.3 381 69.6
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 8.5e-153 544.3 416 66.1
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 8.5e-153 544.3 406 68.7
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 1.9e-152 543.1 410 66.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.2e-152 542.0 399 66.4
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 5.5e-152 541.6 400 68.8
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 7.2e-152 541.2 376 70.5
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 9.4e-152 540.8 377 68.7
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.6e-151 540.0 405 66.2
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 4.7e-151 538.5 379 69.4
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.3e-150 536.2 421 64.6
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 2.3e-150 536.2 418 66.0
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 3.0e-150 535.8 401 66.1
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 3.9e-150 535.4 381 69.6
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 8.8e-150 534.3 383 69.5
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 1.1e-149 533.9 409 65.8
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.5e-149 533.5 406 67.0
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.0e-149 533.1 386 67.6
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 4.4e-149 531.9 441 62.1
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 5.7e-149 531.6 418 64.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 7.4e-149 531.2 415 66.0
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 1.7e-148 530.0 400 66.8
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 2.8e-148 529.3 401 66.1
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.7e-148 528.9 375 68.8
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 4.8e-148 528.5 384 68.8
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.2e-146 523.9 383 66.8
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 1.7e-145 520.0 376 69.7
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.2e-145 519.6 373 69.2
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.2e-145 519.6 373 69.2
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 6.5e-145 518.1 420 64.3
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 4.2e-144 515.4 387 64.6
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.2e-144 515.4 399 64.7
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 7.2e-144 514.6 411 63.5
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.2e-143 513.8 403 65.0
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 1.2e-143 513.8 406 65.3
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 2.7e-143 512.7 412 65.5
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 8.0e-143 511.1 395 65.3
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 2.3e-142 509.6 356 69.9
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.6e-141 506.1 380 64.5
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 3.3e-141 505.8 373 67.8
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 7.5e-141 504.6 373 67.8
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 2.5e-136 489.6 377 65.8
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.1e-131 472.6 387 60.5
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 2.0e-130 469.9 373 63.3
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 3.5e-130 469.2 388 62.1
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 5.5e-128 461.8 449 56.3
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 3.4e-125 452.6 366 62.6
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 4.5e-122 442.2 424 57.5
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.6e-119 433.7 376 61.4
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 9.8e-117 424.5 403 55.6
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 9.2e-115 417.9 382 56.5
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 1.7e-113 413.7 389 57.6
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.0e-113 412.9 392 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 8.6e-113 411.4 397 53.9
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 1.9e-112 410.2 376 55.3
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 2.5e-112 409.8 371 58.0
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.3e-105 387.5 396 50.0
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.7e-105 387.1 373 54.4
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 6.6e-105 385.2 386 52.1
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 5.1e-97 359.0 285 65.3
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.6e-95 352.8 322 59.6
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 6.8e-94 348.6 277 61.4
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 5.4e-91 339.0 385 48.8
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.2e-91 338.2 223 70.4
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.4e-86 324.3 325 53.2
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 7.8e-82 308.5 403 43.9
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.4e-78 297.0 173 80.3
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.4e-78 297.0 173 80.3
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.1e-64 251.5 384 39.8
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 7.4e-56 222.2 168 63.1
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.2e-53 214.9 427 36.5
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 4.8e-47 193.0 120 75.0
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 4.1e-38 163.3 400 33.0
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-36 158.7 159 56.0
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.9e-36 157.1 137 59.1
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.8e-36 156.8 149 58.4
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 2.0e-29 134.4 82 76.8
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.2e-28 131.0 396 29.8
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 1.1e-11 75.5 69 55.1
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-10 71.6 73 49.3
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-10 71.6 73 49.3
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 7.5e-08 62.8 95 37.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.9e-07 60.1 392 23.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 5.4e-06 56.6 430 24.2


User provided reference genes

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