Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 6.8e-45 184.1 131 100.0
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 9.3e-18 94.0 68 64.7
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 2.1e-17 92.8 65 64.6
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 2.5e-15 85.9 65 63.1
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 9.6e-15 84.0 56 66.1
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 1.3e-14 83.6 65 60.0
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 2.1e-14 82.8 72 59.7
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 3.7e-14 82.0 58 63.8
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 4.8e-14 81.6 58 62.1
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 6.3e-14 81.3 64 57.8
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 1.4e-13 80.1 62 61.3
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 1.4e-13 80.1 63 61.9
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 4.1e-13 78.6 72 56.9
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 1.2e-12 77.0 62 58.1
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.2e-12 77.0 64 57.8
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 1.2e-12 77.0 61 59.0
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 1.5e-12 76.6 58 60.3
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 2.0e-12 76.3 63 57.1
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 2.6e-12 75.9 62 54.8
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 3.4e-12 75.5 57 59.6
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.4e-12 75.5 64 53.1
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 1.0e-11 73.9 57 59.6
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 1.3e-11 73.6 63 57.1
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 1.7e-11 73.2 59 59.3
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.9e-11 72.4 59 57.6
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 2.9e-11 72.4 57 57.9
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 2.9e-11 72.4 63 54.0
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.9e-11 72.4 55 60.0
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 5.0e-11 71.6 71 52.1
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 6.5e-11 71.2 54 61.1
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 6.5e-11 71.2 53 62.3
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 8.4e-11 70.9 71 50.7
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 8.4e-11 70.9 64 56.2
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.9e-10 69.7 54 59.3
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.5e-10 69.3 65 50.8
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 2.5e-10 69.3 65 52.3
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 3.2e-10 68.9 54 59.3
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 3.2e-10 68.9 57 59.6
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 5.5e-10 68.2 62 50.0
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 5.5e-10 68.2 53 60.4
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 7.2e-10 67.8 54 57.4
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 9.3e-10 67.4 58 60.3
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 2.1e-09 66.2 62 51.6
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 2.7e-09 65.9 66 50.0
Glyma.02G278700 Glycine max HOM05D009394 ORTHO05D002431 2.7e-09 65.9 62 46.8
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 6.1e-09 64.7 64 50.0
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 6.1e-09 64.7 59 54.2
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 6.1e-09 64.7 59 52.5
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 7.9e-09 64.3 57 54.4
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.0e-08 63.9 64 50.0
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 1.3e-08 63.5 63 52.4
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.8e-08 63.2 62 53.2
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 2.3e-08 62.8 69 46.4
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 2.3e-08 62.8 62 51.6
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 2.3e-08 62.8 62 51.6
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.3e-08 62.8 64 48.4
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.3e-08 62.8 64 48.4
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 2.3e-08 62.8 64 48.4
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 2.3e-08 62.8 58 50.0
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 3.9e-08 62.0 57 54.4
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 3.9e-08 62.0 49 59.2
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 5.1e-08 61.6 60 51.7
Glyma.07G232600 Glycine max HOM05D009394 ORTHO05D002431 8.7e-08 60.8 60 51.7
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 1.1e-07 60.5 57 52.6
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 1.1e-07 60.5 57 52.6
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 1.1e-07 60.5 57 52.6
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 1.9e-07 59.7 47 55.3
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.5e-07 59.3 55 52.7
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.5e-07 59.3 55 52.7
MBI02_g18928_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 3.3e-07 58.9 70 47.1
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 4.3e-07 58.5 55 49.1
Ah.04g159710 Amaranthus hybridus HOM05D002917 ORTHO05D002431 5.7e-07 58.2 71 43.7
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.4e-07 57.8 59 49.2
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 7.4e-07 57.8 55 50.9
Migut.N02378 Erythranthe guttata HOM05D009394 ORTHO05D002431 7.4e-07 57.8 53 52.8
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 7.4e-07 57.8 59 49.2
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.3e-06 57.0 56 50.0
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 1.3e-06 57.0 56 50.0
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 1.3e-06 57.0 56 50.0
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.3e-06 57.0 56 50.0
Psat5g191400 Pisum sativum HOM05D009394 ORTHO05D002431 1.3e-06 57.0 61 45.9
Actinidia06975 Actinidia chinensis HOM05D009394 ORTHO05D002431 2.2e-06 56.2 61 45.9
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.8e-06 55.8 67 43.3
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.8e-06 55.8 67 43.3
arahy.Tifrunner.gnm1.ann1.48WV5B Arachis hypogaea HOM05D033084 ORTHO05D002431 6.3e-06 54.7 59 47.5
arahy.Tifrunner.gnm1.ann1.7K9SF4 Arachis hypogaea HOM05D033084 ORTHO05D002431 6.3e-06 54.7 59 47.5


User provided reference genes

Program Settings