Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.5e-30 135.6 69 100.0
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 8.9e-20 99.8 73 74.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 2.5e-14 81.6 55 72.7
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 7.3e-14 80.1 48 81.2
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.8e-13 78.2 70 62.9
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 2.8e-13 78.2 54 70.4
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.8e-13 78.2 51 74.5
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.8e-13 78.2 54 70.4
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 4.8e-13 77.4 61 63.9
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 6.2e-13 77.0 48 79.2
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.1e-12 76.3 57 66.7
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.8e-12 75.5 54 74.1
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.8e-12 75.5 61 65.6
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.1e-12 74.7 48 77.1
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 3.1e-12 74.7 69 62.3
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 4.0e-12 74.3 52 69.2
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 5.3e-12 73.9 66 62.1
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 6.9e-12 73.6 42 88.1
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.5e-11 72.4 43 81.4
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 1.5e-11 72.4 57 64.9
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 2.0e-11 72.0 57 66.7
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.0e-11 72.0 66 60.6
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.0e-11 72.0 60 65.0
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.6e-11 71.6 57 66.7
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.6e-11 71.6 61 57.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 2.6e-11 71.6 51 66.7
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 4.5e-11 70.9 55 67.3
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.8e-11 70.5 57 63.2
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.8e-11 70.5 58 65.5
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.3e-10 69.3 49 67.3
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.7e-10 68.9 53 62.3
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.9e-10 68.2 59 62.7
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 3.8e-10 67.8 60 58.3
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 6.4e-10 67.0 54 66.7
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 8.4e-10 66.6 49 59.2
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.1e-09 66.2 64 56.2
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.1e-09 66.2 49 65.3
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.1e-09 66.2 50 62.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.1e-09 66.2 66 56.1
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-09 66.2 51 60.8
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.4e-09 65.9 60 58.3
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.4e-09 65.9 50 62.0
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.4e-09 65.9 61 55.7
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.9e-09 65.5 48 66.7
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.9e-09 65.5 48 66.7
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.9e-09 65.5 48 66.7
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.9e-09 65.5 48 66.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 1.9e-09 65.5 46 67.4
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.9e-09 65.5 48 64.6
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 2.4e-09 65.1 57 59.6
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 2.4e-09 65.1 58 62.1
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 5.4e-09 63.9 49 61.2
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 5.4e-09 63.9 48 64.6
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 7.1e-09 63.5 48 62.5
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 7.1e-09 63.5 48 64.6
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 7.1e-09 63.5 48 64.6
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 7.1e-09 63.5 61 55.7
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 9.3e-09 63.2 63 54.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-08 62.8 57 56.1
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.6e-08 62.4 48 62.5
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.6e-08 62.4 55 60.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.1e-08 62.0 64 54.7
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 2.7e-08 61.6 57 52.6
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 3.5e-08 61.2 65 53.8
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 4.6e-08 60.8 69 52.2
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.6e-08 60.8 61 52.5
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 4.6e-08 60.8 70 48.6
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 6.0e-08 60.5 45 64.4
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 7.9e-08 60.1 42 73.8
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 7.9e-08 60.1 50 56.0
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.0e-07 59.7 48 60.4
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.0e-07 59.7 48 58.3
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.3e-07 59.3 55 56.4
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.3e-07 59.3 51 54.9
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.3e-07 59.3 37 78.4
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.3e-07 58.5 46 58.7
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.3e-07 58.5 54 57.4
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.3e-07 58.5 40 75.0
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 3.0e-07 58.2 48 58.3
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 3.0e-07 58.2 50 56.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 3.0e-07 58.2 43 62.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 3.0e-07 58.2 55 49.1
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 6.7e-07 57.0 45 57.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 8.7e-07 56.6 59 54.2
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 1.9e-06 55.5 58 53.4
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 4.3e-06 54.3 43 62.8


User provided reference genes

Program Settings