Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G016070 Cucumis sativus L. HOM05D000157 ORTHO05D000311 2.6e-62 241.9 124 100.0
MELO3C026831.2 Cucumis melo HOM05D000157 ORTHO05D000311 1.0e-45 186.8 107 92.5
ClCG02G019440 Citrullus lanatus HOM05D000157 ORTHO05D000311 5.7e-41 171.0 107 87.9
Sed0010924 Sechium edule HOM05D000157 ORTHO05D000311 5.7e-33 144.4 107 79.4
Actinidia32629 Actinidia chinensis HOM05D000157 ORTHO05D000311 4.0e-18 95.1 84 61.9
GSVIVG01024698001 Vitis vinifera HOM05D000157 ORTHO05D000311 4.0e-18 95.1 102 53.9
RcHm_v2.0_Chr5g0070411 Rosa chinensis HOM05D000157 ORTHO05D000311 3.4e-17 92.0 89 58.4
FAN11G1221 Fragaria x ananassa HOM05D000157 ORTHO05D000311 5.7e-17 91.3 107 51.4
FvH4_3g39090 Fragaria vesca HOM05D000157 ORTHO05D000311 9.8e-17 90.5 89 57.3
FAN16G2179 Fragaria x ananassa HOM05D000157 ORTHO05D000311 9.8e-17 90.5 89 57.3
FAN21G1675 Fragaria x ananassa HOM05D000157 ORTHO05D000311 1.3e-16 90.1 107 50.5
FAN25G1255 Fragaria x ananassa HOM05D000157 ORTHO05D000311 2.2e-16 89.4 107 50.5
CSS0019327 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D000311 2.8e-16 89.0 85 56.5
Cpa.g.sc2.425 Carica papaya HOM05D000157 ORTHO05D000311 4.8e-16 88.2 105 53.3
CiPaw.14G057000 Carya illinoinensis HOM05D000157 ORTHO05D000311 6.3e-16 87.8 88 55.7
Potri.001G279200 Populus trichocarpa HOM05D000157 ORTHO05D000311 8.3e-16 87.4 102 52.9
CSS0009820 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D000311 1.1e-15 87.0 85 55.3
Duzib170G0907 Durio zibethinus HOM05D000157 ORTHO05D000311 1.8e-15 86.3 102 54.9
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 4.1e-15 85.1 103 53.4
Sabra16G0172900 Salix brachista HOM05D000157 ORTHO05D000311 5.4e-15 84.7 99 52.5
COL.COLO4_11091 Corchorus olitorius HOM05D000157 ORTHO05D000311 1.2e-14 83.6 93 54.8
Hma1.2p1_1981F.1_g309930 Hydrangea macrophylla HOM05D031009 ORTHO05D000311 1.6e-14 83.2 87 55.2
QL01p039130 Quercus lobata HOM05D000157 ORTHO05D000311 1.6e-14 83.2 87 58.6
Thecc.09G352400 Theobroma cacao HOM05D000157 ORTHO05D000311 1.0e-13 80.5 91 54.9
Ciclev10029990m.g Citrus clementina HOM05D000157 ORTHO05D000311 1.3e-13 80.1 75 58.7
Gohir.A03G028400 Gossypium hirsutum HOM05D000157 ORTHO05D000311 1.7e-13 79.7 93 50.5
Prupe.6G053700 Prunus persica HOM05D000157 ORTHO05D000311 1.7e-13 79.7 73 60.3
Duzib168G1781 Durio zibethinus HOM05D000157 ORTHO05D000311 2.2e-13 79.3 91 53.8
Gorai.003G147000 Gossypium raimondii HOM05D000157 ORTHO05D000311 2.2e-13 79.3 93 50.5
Duzib150G0507 Durio zibethinus HOM05D000157 ORTHO05D000311 2.9e-13 79.0 91 54.9
Oeu002428.1 Olea europaea HOM05D000157 ORTHO05D000311 3.8e-13 78.6 84 57.1
Gohir.D03G140200 Gossypium hirsutum HOM05D000157 ORTHO05D000311 6.5e-13 77.8 104 48.1
CSS0042037 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D000311 2.5e-12 75.9 107 50.5
MD03G1064500 Malus domestica HOM05D000157 ORTHO05D000311 2.5e-12 75.9 68 61.8
Lalb_Chr18g0051121 Lupinus albus HOM05D000157 ORTHO05D000311 3.2e-12 75.5 106 46.2
Potri.009G073900 Populus trichocarpa HOM05D000157 ORTHO05D000311 3.2e-12 75.5 102 47.1
TWI31G1420 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 5.5e-12 74.7 90 53.3
Cc01_g14520 Coffea canephora HOM05D000157 ORTHO05D000311 9.4e-12 73.9 107 47.7
TWI75G1385 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 1.2e-11 73.6 90 52.2
Cfa011731 Carpinus fangiana HOM05D000157 ORTHO05D000311 1.6e-11 73.2 85 51.8
CiPaw.13G074300 Carya illinoinensis HOM05D000157 ORTHO05D000311 1.6e-11 73.2 74 54.1
DCAR_007358 Daucus carota HOM05D000157 ORTHO05D000311 3.6e-11 72.0 107 46.7
Nn2g13193 Nelumbo nucifera HOM05D000157 ORTHO05D000311 3.6e-11 72.0 92 47.8
Sabra09G0055900 Salix brachista HOM05D000157 ORTHO05D000311 4.7e-11 71.6 89 50.6
CsaV3_1G036400 Cucumis sativus L. HOM05D000157 ORTHO05D000311 6.1e-11 71.2 85 52.9
Haze_24370 Corylus avellana HOM05D000157 ORTHO05D000311 8.0e-11 70.9 85 49.4
TPR.G32900 Trifolium pratense HOM05D000157 ORTHO05D000311 1.0e-10 70.5 94 46.8
ClCG03G000540 Citrullus lanatus HOM05D000157 ORTHO05D000311 1.8e-10 69.7 85 50.6
MELO3C020529.2 Cucumis melo HOM05D000157 ORTHO05D000311 4.0e-10 68.6 86 52.3
MD11G1068600 Malus domestica HOM05D000157 ORTHO05D000311 5.2e-10 68.2 58 62.1
Lj6g0017493 Lotus japonicus HOM05D000086 ORTHO05D000311 8.8e-10 67.4 91 47.3
Manes.18G141700 Manihot esculenta HOM05D000157 ORTHO05D000311 8.8e-10 67.4 66 59.1
PGSC0003DMG400020544 Solanum tuberosum HOM05D000157 ORTHO05D000311 8.8e-10 67.4 111 47.7
Psat5g156840 Pisum sativum HOM05D000157 ORTHO05D000311 1.2e-09 67.0 94 46.8
CANSAT54G2777 Cannabis sativa HOM05D000157 ORTHO05D000311 1.5e-09 66.6 104 48.1
Medtr3g464780 Medicago truncatula HOM05D000157 ORTHO05D000311 2.6e-09 65.9 94 45.7
Lalb_Chr15g0083051 Lupinus albus HOM05D000157 ORTHO05D000311 3.4e-09 65.5 96 45.8
Solyc06g007230.2 Solanum lycopersicum HOM05D000157 ORTHO05D000311 4.4e-09 65.1 101 46.5
Glyma.11G169600 Glycine max HOM05D000157 ORTHO05D000311 5.7e-09 64.7 95 45.3
Oeu017400.1 Olea europaea HOM05D000157 ORTHO05D000311 5.7e-09 64.7 74 51.4
Glyma.11G172300 Glycine max HOM05D000157 ORTHO05D000311 7.5e-09 64.3 95 45.3
Lsat_1_v5_gn_9_18841 Lactuca sativa HOM05D000157 ORTHO05D000311 7.5e-09 64.3 82 51.2
Nitab4.5_0000752g0060 Nicotiana tabacum HOM05D000157 ORTHO05D000311 9.8e-09 63.9 56 62.5
Phvul.006G070000 Phaseolus vulgaris HOM05D000086 ORTHO05D000311 1.3e-08 63.5 95 44.2
Atru.chr3.4167 Acer truncatum HOM05D000157 ORTHO05D000311 1.7e-08 63.2 101 43.6
VMungo0540G2487 Vigna mungo HOM05D000157 ORTHO05D000311 2.2e-08 62.8 96 44.8
HanXRQChr17g0555361 Helianthus annuus HOM05D000086 ORTHO05D000311 1.1e-07 60.5 65 55.4
Ca_14965_v3 Cicer arietinum L. HOM05D000157 ORTHO05D000311 1.4e-07 60.1 82 47.6
Rhsim01G0239000 Rhododendron simsii HOM05D000157 ORTHO05D000311 4.1e-07 58.5 84 45.2
PSO339G0496 Papaver somniferum HOM05D000157 ORTHO05D000311 5.4e-07 58.2 88 48.9
PSO801G0430 Papaver somniferum HOM05D000157 ORTHO05D000311 5.4e-07 58.2 88 48.9
arahy.Tifrunner.gnm1.ann1.C3YMZR Arachis hypogaea HOM05D000157 ORTHO05D000311 9.2e-07 57.4 102 38.2
arahy.Tifrunner.gnm1.ann1.MND9FT Arachis hypogaea HOM05D000157 ORTHO05D000311 9.2e-07 57.4 102 38.2
Glyma.02G228800 Glycine max HOM05D000157 ORTHO05D000311 9.2e-07 57.4 73 49.3
TAR633G1281 Trochodendron aralioides HOM05D000157 ORTHO05D000311 1.6e-06 56.6 75 49.3
Peaxi162Scf01234g00005 Petunia axillaris HOM05D000157 ORTHO05D000311 2.7e-06 55.8 108 43.5


User provided reference genes

Program Settings