Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 9.1e-273 943.0 475 100.0
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 7.8e-240 833.6 471 88.5
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 1.3e-234 816.2 539 80.9
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.6e-216 756.1 471 80.7
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 7.2e-169 597.8 446 66.8
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 9.4e-169 597.4 448 67.4
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 1.5e-166 590.1 448 66.5
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 5.7e-166 588.2 429 68.3
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 8.2e-165 584.3 443 67.0
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 8.2e-165 584.3 430 66.0
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 8.2e-165 584.3 431 68.2
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 2.4e-164 582.8 443 66.6
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.7e-163 579.3 429 67.1
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.3e-162 577.0 445 66.1
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 2.9e-162 575.9 445 64.9
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.5e-161 572.8 445 64.5
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 5.5e-161 571.6 429 66.4
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 2.1e-160 569.7 445 65.4
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 2.1e-160 569.7 446 64.6
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 8.0e-160 567.8 430 65.3
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 8.8e-159 564.3 431 62.6
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.8e-159 564.3 458 64.6
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.4e-158 562.0 431 66.1
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 6.3e-157 558.1 442 64.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.1e-156 557.4 461 62.9
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 1.1e-156 557.4 452 64.4
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.1e-156 555.8 446 63.7
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.6e-155 553.5 446 64.1
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 1.6e-155 553.5 451 60.5
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 2.7e-155 552.7 457 61.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.7e-155 552.7 429 62.5
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 5.9e-155 551.6 441 61.0
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 1.3e-154 550.4 457 61.1
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.2e-154 549.7 445 64.0
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 5.0e-154 548.5 447 62.4
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 8.5e-154 547.7 429 63.6
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 1.5e-153 547.0 453 61.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 1.9e-153 546.6 408 65.9
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 9.5e-153 544.3 466 60.9
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 9.5e-153 544.3 432 60.9
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 1.2e-152 543.9 438 61.4
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 1.4e-151 540.4 429 60.6
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 4.0e-151 538.9 448 62.5
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 6.8e-151 538.1 429 60.1
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 8.8e-151 537.7 429 60.1
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 8.8e-151 537.7 448 60.9
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.6e-150 536.2 454 61.0
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 6.3e-149 531.6 458 60.7
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.1e-148 530.8 456 59.6
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.8e-148 530.0 431 60.3
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 2.0e-147 526.6 439 59.2
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.3e-146 523.9 430 62.8
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 2.5e-145 519.6 431 61.0
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.6e-144 516.9 471 58.8
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.8e-144 516.2 448 58.0
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 3.6e-144 515.8 427 62.3
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 6.1e-144 515.0 448 58.7
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.4e-143 513.8 421 62.5
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 6.8e-143 511.5 450 57.8
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 6.8e-143 511.5 448 58.0
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 8.9e-143 511.1 393 66.2
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 2.6e-142 509.6 450 58.7
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 4.4e-142 508.8 450 57.8
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.7e-141 506.9 422 60.7
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.1e-140 504.2 447 58.4
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.4e-140 503.8 430 60.2
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 2.4e-140 503.1 429 60.8
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 4.1e-140 502.3 448 58.5
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 3.5e-139 499.2 447 58.8
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 3.5e-139 499.2 448 58.3
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 4.6e-139 498.8 456 57.5
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 1.1e-137 494.2 433 59.1
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 5.6e-137 491.9 453 55.0
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 3.1e-135 486.1 478 55.0
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.2e-134 484.2 454 55.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.7e-131 473.0 358 64.8
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 7.8e-131 471.5 444 53.4
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.7e-130 470.3 430 57.0
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 3.0e-130 469.5 444 53.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 7.3e-129 464.9 444 56.1
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.4e-126 456.1 453 56.5
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 2.1e-123 446.8 425 54.4
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 6.0e-123 445.3 427 54.8
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.9e-118 427.9 451 53.9
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 3.9e-114 416.0 304 64.8
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 1.8e-111 407.1 295 67.1
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 9.0e-111 404.8 316 64.6
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 4.4e-110 402.5 350 58.3
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 3.8e-109 399.4 441 47.8
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 7.1e-108 395.2 370 58.4
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 2.1e-107 393.7 313 64.9
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 1.5e-102 377.5 320 60.0
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.5e-102 377.5 366 50.0
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 5.8e-102 375.6 360 52.2
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 5.3e-95 352.4 314 59.2
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 6.9e-95 352.1 441 44.9
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.5e-94 350.9 319 56.7
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 3.4e-94 349.7 318 56.9
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 5.5e-92 342.4 319 55.8
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.2e-91 341.3 402 46.0
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.1e-87 328.2 400 48.5
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 5.7e-81 305.8 251 63.7
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 8.5e-77 292.0 352 47.2
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.4e-70 270.0 242 58.7
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.4e-70 270.0 431 41.1
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 4.2e-68 263.1 212 62.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 7.2e-68 262.3 213 61.0
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 8.5e-61 238.8 174 62.1
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.5e-57 228.0 212 52.8
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 1.2e-54 218.4 212 55.2
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 2.7e-43 180.6 231 43.7
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.5e-41 174.9 175 53.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.7e-40 170.2 135 62.2
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 6.3e-40 169.5 128 69.5
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 2.3e-34 151.0 137 58.4
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 3.4e-33 147.1 134 59.0
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 5.0e-29 133.3 133 54.9
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.7e-24 118.2 97 61.9
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.5e-20 104.4 76 67.1
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 2.5e-20 104.4 103 49.5
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.7e-16 91.7 433 22.9
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 4.9e-16 90.1 373 23.1
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 2.4e-15 87.8 120 44.2
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 3.2e-15 87.4 388 23.5
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 3.3e-12 77.4 46 82.6
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.4e-07 61.2 40 72.5


User provided reference genes

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