Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 2.9e-295 1018.8 1063 100.0
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 1.4e-265 920.2 1082 89.0
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 2.5e-262 909.4 1071 93.8
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 7.4e-230 801.6 1066 86.7
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.2e-142 511.9 718 63.1
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 1.2e-142 511.9 1077 72.1
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 1.3e-141 508.4 808 64.1
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.7e-141 508.1 759 63.2
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 1.4e-140 505.0 1065 64.5
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 5.6e-137 493.0 757 62.9
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 4.7e-136 490.0 751 69.8
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 6.8e-135 486.1 765 67.2
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 4.4e-134 483.4 765 67.3
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.2e-133 481.1 782 66.4
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 6.4e-133 479.6 776 53.2
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 8.4e-133 479.2 755 67.9
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 1.1e-132 478.8 754 63.4
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 2.7e-131 474.2 755 67.4
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 3.5e-131 473.8 755 67.4
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 3.5e-131 473.8 759 57.7
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 6.0e-131 473.0 772 65.4
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.7e-130 471.5 772 65.5
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 2.3e-130 471.1 757 63.5
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 5.1e-130 469.9 766 59.3
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 8.6e-130 469.2 762 66.3
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 1.5e-129 468.4 768 59.2
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.9e-129 468.0 776 68.0
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 4.3e-129 466.8 773 63.6
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 4.3e-129 466.8 777 66.4
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 3.1e-127 460.7 743 65.8
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 6.9e-127 459.5 762 58.1
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 9.9e-126 455.7 739 65.9
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 2.2e-125 454.5 772 65.3
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 8.4e-125 452.6 752 71.4
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.9e-124 451.4 739 65.4
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.4e-124 451.1 726 63.2
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 2.4e-124 451.1 749 54.7
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 1.2e-123 448.7 756 65.7
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 6.0e-123 446.4 770 57.8
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 7.8e-123 446.0 751 69.1
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 1.1e-121 442.2 776 67.1
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 2.5e-121 441.0 747 65.7
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 2.8e-120 437.6 759 64.4
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 2.8e-120 437.6 773 69.7
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 3.6e-120 437.2 752 71.0
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 1.5e-118 431.8 773 68.8
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 5.8e-118 429.9 770 67.8
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 1.3e-117 428.7 760 63.9
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 1.7e-117 428.3 753 70.0
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 2.2e-117 427.9 791 69.4
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 3.8e-117 427.2 768 64.5
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 2.4e-116 424.5 772 63.3
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 1.2e-115 422.2 771 59.9
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 2.7e-115 421.0 770 59.1
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 2.7e-115 421.0 750 59.5
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.8e-114 418.3 763 59.4
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 3.0e-114 417.5 738 63.0
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 8.7e-114 416.0 754 60.3
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 1.1e-113 415.6 1069 63.2
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 2.5e-113 414.5 749 67.6
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 4.3e-113 413.7 766 56.3
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 4.3e-113 413.7 749 69.3
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 4.8e-112 410.2 754 66.0
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 4.0e-111 407.1 769 60.7
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 5.3e-111 406.8 768 62.0
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 9.0e-111 406.0 848 59.6
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 3.4e-110 404.1 765 59.6
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 1.3e-109 402.1 772 57.3
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 2.9e-109 401.0 763 58.7
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 2.9e-109 401.0 769 58.9
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 1.4e-108 398.7 775 55.4
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 3.2e-108 397.5 763 68.3
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 7.1e-108 396.4 765 59.1
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 1.8e-106 391.7 770 58.6
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 5.1e-106 390.2 766 58.4
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 4.3e-105 387.1 744 63.8
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 5.6e-105 386.7 757 67.9
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 1.0e-98 365.9 767 57.1
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 5.9e-94 350.1 781 59.4
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 4.8e-88 330.5 756 56.9
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 5.9e-86 323.6 768 62.9
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 6.5e-77 293.5 647 63.2
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 1.9e-76 292.0 702 51.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 5.5e-68 263.8 277 50.2
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 8.2e-64 250.0 275 50.2
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 7.0e-63 246.9 283 49.5
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 1.1e-60 239.6 274 49.6
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.0e-58 233.0 268 48.9
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 4.4e-57 227.6 717 53.6
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 2.4e-55 221.9 128 85.2
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 2.1e-51 208.8 162 63.0
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 3.4e-49 201.4 285 39.6
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 2.3e-42 178.7 262 38.2
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 3.0e-42 178.3 194 50.5
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 5.4e-39 167.5 172 51.2
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 2.2e-32 145.6 289 33.9
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 1.4e-31 142.9 201 42.8
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 3.7e-24 118.2 94 62.8
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 1.9e-20 105.9 84 61.9
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 4.3e-20 104.8 140 45.0
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 5.6e-20 104.4 281 25.6
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 2.0e-17 95.9 116 44.8
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 8.4e-16 90.5 82 53.7
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 1.3e-13 83.2 174 31.0
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.7e-13 82.8 50 76.0
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 4.0e-10 71.6 75 49.3
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 9.9e-09 67.0 97 38.1
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 4.9e-08 64.7 91 35.2
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.9e-08 64.7 91 35.2
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.9e-08 64.7 91 35.2
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 6.4e-08 64.3 93 34.4
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 6.4e-08 64.3 100 34.0
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 6.4e-08 64.3 91 35.2
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 6.4e-08 64.3 100 34.0
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 6.4e-08 64.3 89 38.2
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 1.1e-07 63.5 80 37.5
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.1e-07 63.5 91 34.1
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 1.1e-07 63.5 102 32.4
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 1.4e-07 63.2 100 33.0
SalBow1G6410 Salvia bowleyana HOM05D002479 ORTHO05D002675 1.4e-07 63.2 89 39.3
Cfa014560 Carpinus fangiana HOM05D002479 ORTHO05D002675 1.9e-07 62.8 100 34.0
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 1.9e-07 62.8 80 37.5
QL08p037589 Quercus lobata HOM05D002479 ORTHO05D002675 1.9e-07 62.8 100 33.0
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 1.9e-07 62.8 57 57.9
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 2.4e-07 62.4 100 35.0
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 2.4e-07 62.4 91 35.2
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 2.4e-07 62.4 228 25.0
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 2.4e-07 62.4 91 36.3
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 4.2e-07 61.6 100 37.0
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 4.2e-07 61.6 100 33.0
TAR636G0077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 4.2e-07 61.6 41 70.7
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 5.4e-07 61.2 91 36.3
Sed0003943 Sechium edule HOM05D002479 ORTHO05D002675 5.4e-07 61.2 236 23.7
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 7.1e-07 60.8 79 39.2
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 7.1e-07 60.8 79 39.2
CDE03G0140 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 7.1e-07 60.8 56 50.0
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 7.1e-07 60.8 91 34.1
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 9.3e-07 60.5 91 34.1
Haze_13105 Corylus avellana HOM05D002479 ORTHO05D002675 9.3e-07 60.5 100 33.0
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 9.3e-07 60.5 102 32.4
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 9.3e-07 60.5 102 32.4
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 9.3e-07 60.5 100 34.0
CsaV3_4G030850 Cucumis sativus L. HOM05D002479 ORTHO05D002675 1.2e-06 60.1 222 23.9
CsaV3_5G040330 Cucumis sativus L. HOM05D002479 ORTHO05D002675 1.2e-06 60.1 131 31.3
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 1.2e-06 60.1 100 33.0
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 94 31.9
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.6e-06 59.7 104 33.7
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 1.6e-06 59.7 91 34.1
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 1.6e-06 59.7 100 31.0
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 1.6e-06 59.7 102 32.4
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.6e-06 59.7 83 38.6
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 2.1e-06 59.3 85 37.6
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 2.1e-06 59.3 93 33.3
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 2.7e-06 58.9 91 33.0
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 2.7e-06 58.9 100 32.0
Cpa.g.sc34.115 Carica papaya HOM05D002479 ORTHO05D002675 2.7e-06 58.9 100 35.0
Manes.13G150200 Manihot esculenta HOM05D002479 ORTHO05D002675 2.7e-06 58.9 100 32.0
Prupe.3G233300 Prunus persica HOM05D002479 ORTHO05D002675 2.7e-06 58.9 91 35.2
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 2.7e-06 58.9 80 35.0
Actinidia07832 Actinidia chinensis HOM05D002479 ORTHO05D002675 3.5e-06 58.5 124 29.8
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 3.5e-06 58.5 85 31.8
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 3.5e-06 58.5 97 32.0
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 3.5e-06 58.5 98 32.7
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 3.5e-06 58.5 113 31.9
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 4.6e-06 58.2 85 32.9
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 4.6e-06 58.2 85 36.5
Duzib212G0327 Durio zibethinus HOM05D002479 ORTHO05D002675 4.6e-06 58.2 82 36.6
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 4.6e-06 58.2 113 27.4
Sp3g20700 Schrenkiella parvula HOM05D002479 ORTHO05D002675 4.6e-06 58.2 85 32.9
Nitab4.5_0011268g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.0e-06 57.8 228 25.0
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 6.0e-06 57.8 100 32.0
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 7.8e-06 57.4 90 31.1
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 7.8e-06 57.4 90 31.1
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 7.8e-06 57.4 90 31.1
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 7.8e-06 57.4 90 31.1
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 7.8e-06 57.4 90 31.1
CARHR098950 Cardamine hirsuta HOM05D002479 ORTHO05D002675 7.8e-06 57.4 85 31.8
Gohir.A09G221700 Gossypium hirsutum HOM05D002479 ORTHO05D002675 7.8e-06 57.4 109 29.4
Gohir.D09G223800 Gossypium hirsutum HOM05D002479 ORTHO05D002675 7.8e-06 57.4 109 29.4
Gorai.006G245300 Gossypium raimondii HOM05D002479 ORTHO05D002675 7.8e-06 57.4 109 29.4


User provided reference genes

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