Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.4e-72 275.4 138 100.0
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.4e-67 259.6 138 94.2
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.4e-59 233.0 141 85.8
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 2.6e-58 228.8 144 81.2
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 8.5e-38 160.6 145 60.0
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 7.2e-37 157.5 143 60.8
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 2.1e-36 156.0 139 59.7
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 1.0e-35 153.7 140 61.4
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 1.0e-35 153.7 123 62.6
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 5.2e-35 151.4 138 60.9
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 6.8e-35 151.0 143 59.4
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.5e-34 149.8 142 61.3
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 1.5e-34 149.8 142 61.3
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.5e-34 149.8 140 60.7
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 2.0e-34 149.4 137 59.9
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.0e-34 149.4 146 63.7
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.0e-34 149.4 142 59.2
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.6e-34 149.1 136 62.5
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 2.6e-34 149.1 142 57.7
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 4.4e-34 148.3 137 59.9
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 7.5e-34 147.5 129 60.5
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 9.8e-34 147.1 143 58.0
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 9.8e-34 147.1 129 62.8
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 1.7e-33 146.4 140 58.6
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.7e-33 146.4 136 58.1
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 2.8e-33 145.6 135 58.5
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 8.3e-33 144.1 137 56.9
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.8e-32 142.9 140 57.1
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 3.1e-32 142.1 136 55.9
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 5.4e-32 141.4 134 58.2
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 1.2e-31 140.2 136 58.8
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 2.0e-31 139.4 141 55.3
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 2.7e-31 139.0 124 62.1
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 2.7e-31 139.0 138 57.2
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 4.5e-31 138.3 139 57.6
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 4.5e-31 138.3 130 57.7
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 4.5e-31 138.3 136 55.9
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 5.9e-31 137.9 134 56.7
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 7.7e-31 137.5 136 56.6
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 7.7e-31 137.5 136 56.6
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 1.7e-30 136.3 148 51.4
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 1.7e-30 136.3 138 54.3
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 2.3e-30 136.0 139 54.7
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 2.3e-30 136.0 139 55.4
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 2.9e-30 135.6 139 54.7
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 2.9e-30 135.6 140 52.9
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.9e-30 135.6 143 53.8
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 5.0e-30 134.8 137 51.8
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 6.6e-30 134.4 122 59.8
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 6.6e-30 134.4 140 52.9
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 6.6e-30 134.4 139 52.5
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 8.6e-30 134.0 131 55.0
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 8.6e-30 134.0 144 55.6
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 1.5e-29 133.3 139 53.2
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.9e-29 132.9 105 61.0
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 1.9e-29 132.9 131 55.0
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.9e-29 132.9 143 53.8
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 4.2e-29 131.7 135 54.1
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 5.5e-29 131.3 142 54.2
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 7.2e-29 131.0 137 53.3
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.2e-28 130.2 135 51.9
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 1.2e-28 130.2 139 52.5
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 2.1e-28 129.4 137 54.7
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 4.7e-28 128.3 159 45.3
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 4.7e-28 128.3 146 49.3
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.0e-27 127.1 140 50.0
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.0e-27 127.1 90 67.8
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.0e-27 127.1 142 52.8
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.4e-27 126.7 134 51.5
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 1.4e-27 126.7 134 51.5
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.4e-27 126.7 134 51.5
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 1.4e-27 126.7 134 51.5
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.4e-27 126.7 140 52.1
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 2.3e-27 125.9 145 51.7
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 2.3e-27 125.9 163 48.5
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.3e-27 125.9 141 52.5
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 3.0e-27 125.6 91 63.7
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 4.0e-27 125.2 94 61.7
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 2.0e-26 122.9 146 50.7
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 3.4e-26 122.1 81 69.1
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 5.7e-26 121.3 133 49.6
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.3e-25 120.2 94 57.4
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 1.3e-25 120.2 94 58.5
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.7e-25 119.8 143 51.7
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 3.7e-25 118.6 145 51.0
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.9e-25 118.2 124 49.2
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 6.3e-25 117.9 78 69.2
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.1e-24 117.1 141 47.5
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 1.4e-24 116.7 139 48.9
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.4e-24 116.7 81 67.9
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 3.2e-24 115.5 137 48.2
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 4.1e-24 115.2 123 48.8
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 9.2e-24 114.0 104 58.7
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 1.2e-23 113.6 128 48.4
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 1.6e-23 113.2 129 49.6
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 2.7e-23 112.5 130 48.5
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 2.7e-23 112.5 78 66.7
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 3.5e-23 112.1 128 48.4
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 3.5e-23 112.1 85 65.9
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 5.9e-23 111.3 141 46.1
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 1.0e-22 110.5 127 48.8
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 1.7e-22 109.8 125 52.8
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 2.3e-22 109.4 135 47.4
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 8.6e-22 107.5 143 47.6
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 7.3e-21 104.4 144 48.6
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 7.3e-21 104.4 119 43.7
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 9.5e-21 104.0 83 57.8
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 9.5e-21 104.0 83 57.8
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 3.6e-20 102.1 77 64.9
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 8.9e-19 97.4 117 51.3
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 1.5e-18 96.7 118 51.7
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 8.3e-17 90.9 91 49.5
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.4e-16 90.1 101 49.5
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 3.2e-16 89.0 71 54.9
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 1.2e-15 87.0 117 49.6
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 4.6e-15 85.1 109 42.2
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 1.0e-14 84.0 79 50.6
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 3.0e-14 82.4 86 54.7
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 5.0e-14 81.6 71 60.6
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 3.6e-12 75.5 84 51.2
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 6.2e-12 74.7 44 65.9
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.2e-10 70.5 116 38.8
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.6e-10 69.3 120 40.0
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 2.2e-09 66.2 121 43.0
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 1.9e-08 63.2 110 38.2
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 4.1e-08 62.0 110 40.0
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 7.1e-08 61.2 90 47.8
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 1.2e-07 60.5 53 52.8
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 3.5e-07 58.9 59 47.5


User provided reference genes

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