Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 0.0e+00 1304.7 663 100.0
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 0.0e+00 1268.8 663 96.8
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 0.0e+00 1246.9 659 95.6
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 0.0e+00 1164.1 664 89.6
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 2.8e-264 915.2 652 71.8
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 7.5e-257 890.6 675 69.0
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 7.5e-257 890.6 661 69.1
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 2.4e-255 885.6 664 69.4
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 1.0e-253 880.2 662 67.4
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 4.3e-252 874.8 662 67.1
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 1.8e-250 869.4 662 67.2
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 3.1e-250 868.6 661 67.5
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.8e-250 867.5 661 67.5
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 3.4e-249 865.1 661 67.8
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 9.8e-249 863.6 661 67.3
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 2.7e-246 855.5 666 66.4
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 2.7e-246 855.5 664 67.8
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 7.8e-246 854.0 662 66.8
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 5.0e-245 851.3 666 67.3
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 2.3e-242 842.4 666 64.9
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 2.3e-242 842.4 666 67.1
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 4.4e-241 838.2 661 66.0
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 7.1e-239 830.9 670 65.7
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 9.2e-239 830.5 662 65.6
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.5e-238 828.6 638 66.8
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 7.8e-238 827.4 666 64.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 5.1e-237 824.7 658 65.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 5.1e-237 824.7 668 63.9
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 8.6e-237 823.9 670 65.2
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 3.4e-233 812.0 655 64.6
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 7.6e-233 810.8 666 64.9
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 3.8e-232 808.5 921 50.7
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 7.1e-231 804.3 661 63.1
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.2e-230 803.5 663 63.3
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.3e-229 800.0 662 63.6
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 3.0e-229 798.9 663 63.7
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 1.9e-228 796.2 663 63.5
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 5.6e-228 794.7 669 63.1
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 4.0e-226 788.5 658 64.1
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 6.9e-226 787.7 658 63.2
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 6.9e-226 787.7 683 60.9
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 6.9e-226 787.7 683 60.9
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 3.4e-225 785.4 673 61.4
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.7e-224 783.1 630 64.3
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 2.2e-224 782.7 763 57.4
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 3.8e-224 781.9 657 62.7
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.8e-224 781.9 674 62.3
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 4.2e-223 778.5 669 62.6
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 9.3e-223 777.3 669 62.5
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 9.3e-223 777.3 663 61.5
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.6e-222 776.5 669 62.5
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 3.5e-222 775.4 667 63.1
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.5e-222 775.4 677 62.0
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 6.0e-222 774.6 669 62.3
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 6.0e-222 774.6 673 61.1
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.1e-220 770.4 674 63.2
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 1.5e-220 770.0 661 60.1
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 1.9e-220 769.6 658 62.5
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 3.6e-219 765.4 659 60.4
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 8.1e-219 764.2 662 60.1
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 3.1e-218 762.3 660 60.9
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.9e-218 761.1 662 61.6
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 3.8e-216 755.4 668 60.5
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 1.1e-215 753.8 659 61.6
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.4e-215 753.4 692 59.8
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.6e-214 748.4 670 60.9
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 6.0e-214 748.0 664 59.0
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 6.0e-214 748.0 670 59.0
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 1.8e-213 746.5 659 60.4
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 6.7e-213 744.6 661 60.7
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 3.3e-212 742.3 660 61.2
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.6e-211 740.0 648 61.1
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 4.8e-211 738.4 659 60.1
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 1.4e-210 736.9 664 59.2
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 1.4e-210 736.9 660 59.8
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 2.0e-209 733.0 660 58.9
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.6e-209 732.6 641 61.5
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 9.9e-209 730.7 659 58.7
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 8.4e-208 727.6 660 59.4
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 1.4e-207 726.9 673 59.0
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 1.9e-207 726.5 676 57.5
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 4.2e-207 725.3 659 58.6
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 9.3e-207 724.2 664 58.1
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 1.3e-205 720.3 665 58.9
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 5.6e-204 714.9 587 63.7
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.7e-203 712.2 675 57.2
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 1.4e-202 710.3 745 52.8
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 7.6e-201 704.5 657 58.1
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 4.2e-199 698.7 658 56.1
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.2e-198 697.2 654 56.1
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.0e-197 694.1 654 56.4
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 3.6e-190 669.1 718 52.8
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 4.3e-188 662.1 655 54.2
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.6e-187 660.2 624 55.9
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.5e-180 637.1 686 53.6
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.3e-179 634.0 677 51.6
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 3.7e-179 632.5 669 51.9
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 8.0e-166 588.2 668 49.7
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 1.8e-162 577.0 493 62.7
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 6.3e-155 552.0 715 43.9
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 2.4e-154 550.1 560 54.1
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 3.6e-150 536.2 661 46.0
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.0e-148 530.4 526 52.3
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 2.3e-141 506.9 658 45.1
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.9e-115 420.2 544 44.9
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 1.6e-97 361.3 294 62.9
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 4.6e-89 333.2 712 33.8
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.3e-86 325.1 404 49.0
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 2.2e-83 314.3 538 38.3
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.6e-81 308.1 667 33.0
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 4.8e-78 296.6 652 30.7
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.3e-62 243.0 165 73.9
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 8.2e-46 189.5 136 70.6
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 1.9e-42 178.3 433 31.6
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 5.5e-42 176.8 343 36.7
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 6.8e-40 169.9 136 62.5
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 8.3e-38 162.9 147 56.5
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 3.6e-33 147.5 100 81.0
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.3e-30 139.0 176 50.6
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 8.3e-30 136.3 342 35.1
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.1e-18 99.4 111 46.8
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.8e-17 94.7 58 72.4
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.2e-15 89.4 50 78.0
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.9e-13 82.0 90 48.9
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 7.8e-12 76.6 49 75.5
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 1.7e-11 75.5 54 61.1
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 6.6e-11 73.6 71 53.5
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.1e-08 66.2 37 86.5
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.8e-08 65.5 130 34.6
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 5.2e-08 63.9 37 83.8


User provided reference genes

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