Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G038030 Cucumis sativus L. HOM05D056254 ORTHO05D034737 1.8e-147 525.8 252 100.0
ClCG09G018220 Citrullus lanatus HOM05D000001 ORTHO05D034737 5.3e-110 401.4 266 74.8
MELO3C033610.2 Cucumis melo HOM05D056254 ORTHO05D034737 5.0e-44 182.2 109 83.5
Sed0003120 Sechium edule HOM05D000001 ORTHO05D000501 4.5e-29 132.5 201 40.3
ClCG10G015120 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.3e-27 125.9 198 34.8
Sed0013035 Sechium edule HOM05D000001 ORTHO05D000501 1.0e-25 121.3 200 35.0
Cfa007559 Carpinus fangiana HOM05D000001 ORTHO05D000501 3.4e-24 116.3 184 37.5
ClCG10G019740 Citrullus lanatus HOM05D000001 ORTHO05D000501 3.4e-24 116.3 214 33.6
ClCG10G015080 Citrullus lanatus HOM05D000001 ORTHO05D000501 4.4e-24 115.9 198 33.3
Sed0005369 Sechium edule HOM05D000001 ORTHO05D000501 2.0e-21 107.1 177 31.6
QL02p082346 Quercus lobata HOM05D000001 ORTHO05D000501 2.5e-19 100.1 231 32.0
Lalb_Chr17g0340721 Lupinus albus HOM05D000001 ORTHO05D000501 3.3e-19 99.8 189 34.4
QL02p078664 Quercus lobata HOM05D000001 ORTHO05D000501 3.3e-19 99.8 184 33.7
arahy.Tifrunner.gnm1.ann1.1LGD4F Arachis hypogaea HOM05D000001 ORTHO05D000501 7.3e-19 98.6 189 33.9
VMungo1215G1461 Vigna mungo HOM05D000001 ORTHO05D000501 7.3e-19 98.6 177 36.7
CsaV3_7G026270 Cucumis sativus L. HOM05D000001 ORTHO05D000501 1.2e-18 97.8 203 31.0
TPR.G39233 Trifolium pratense HOM05D000001 ORTHO05D000501 1.2e-18 97.8 193 35.2
arahy.Tifrunner.gnm1.ann1.V2MLU3 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.6e-18 97.4 189 33.3
ClCG10G015140 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.6e-18 97.4 200 31.5
Lsat_1_v5_gn_8_52600 Lactuca sativa HOM05D000001 ORTHO05D000501 2.1e-18 97.1 189 34.4
Sc04g0008070 Simmondsia chinensis HOM05D000001 ORTHO05D000501 2.1e-18 97.1 258 32.6
arahy.Tifrunner.gnm1.ann1.YHJ5ZY Arachis hypogaea HOM05D000001 ORTHO05D000501 3.6e-18 96.3 189 34.4
ClCG09G008700 Citrullus lanatus HOM05D000001 ORTHO05D000501 3.6e-18 96.3 201 31.8
CsaV3_3G035380 Cucumis sativus L. HOM05D000001 ORTHO05D000501 3.6e-18 96.3 203 30.5
VMungo0251G2849 Vigna mungo HOM05D000001 ORTHO05D000501 3.6e-18 96.3 189 34.9
DCAR_031018 Daucus carota HOM05D000001 ORTHO05D004422 8.0e-18 95.1 191 33.5
Gohir.A12G164700 Gossypium hirsutum HOM05D000001 ORTHO05D000501 8.0e-18 95.1 207 33.8
MELO3C031025.2 Cucumis melo HOM05D000001 ORTHO05D000501 1.1e-17 94.7 202 33.7
Lalb_Chr16g0385781 Lupinus albus HOM05D000001 ORTHO05D000501 1.1e-17 94.7 177 34.5
Gohir.D12G167800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.4e-17 94.4 207 33.8
Phvul.002G170800 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 1.4e-17 94.4 189 34.4
Gorai.008G180700 Gossypium raimondii HOM05D000001 ORTHO05D000501 1.8e-17 94.0 207 33.8
ECA233G2882 Erigeron canadensis HOM05D000001 ORTHO05D000501 2.3e-17 93.6 170 37.1
Gorai.008G180800 Gossypium raimondii HOM05D000001 ORTHO05D000501 2.3e-17 93.6 190 34.7
Gohir.A12G164800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.1e-17 93.2 190 34.7
Phvul.002G084600 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 3.1e-17 93.2 188 34.6
Glyma.20G036100 Glycine max HOM05D000001 ORTHO05D000501 4.0e-17 92.8 190 33.2
Lsat_1_v5_gn_4_9761 Lactuca sativa HOM05D000001 ORTHO05D000501 4.0e-17 92.8 189 32.3
RcHm_v2.0_Chr2g0111611 Rosa chinensis HOM05D000001 ORTHO05D000501 6.8e-17 92.0 199 29.1
THA.LOC104822912 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 8.9e-17 91.7 189 33.3
CARHR014640 Cardamine hirsuta HOM05D000001 ORTHO05D000501 1.5e-16 90.9 214 30.8
VMungo0485G0002 Vigna mungo HOM05D000001 ORTHO05D000501 1.5e-16 90.9 205 29.3
arahy.Tifrunner.gnm1.ann1.LR2QH7 Arachis hypogaea HOM05D000001 ORTHO05D000501 2.0e-16 90.5 206 31.6
Ciclev10032674m.g Citrus clementina HOM05D000001 ORTHO05D000501 2.0e-16 90.5 194 32.5
Phvul.004G064100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 2.0e-16 90.5 198 30.3
PGR119G0008 Punica granatum HOM05D000001 ORTHO05D000501 2.6e-16 90.1 192 32.8
Hund05876 Selenicereus undatus HOM05D000001 ORTHO05D000501 2.6e-16 90.1 239 30.5
AL1G26110 Arabidopsis lyrata HOM05D000001 ORTHO05D000501 3.4e-16 89.7 206 32.0
arahy.Tifrunner.gnm1.ann1.YYPI83 Arachis hypogaea HOM05D000001 ORTHO05D000501 3.4e-16 89.7 194 31.4
Medtr0002s1200 Medicago truncatula HOM05D000001 ORTHO05D000501 3.4e-16 89.7 182 27.5
AT1G14220 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 4.4e-16 89.4 206 31.6
THA.LOC104805164 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 4.4e-16 89.4 189 34.4
QL08p053306 Quercus lobata HOM05D000001 ORTHO05D000501 5.8e-16 89.0 189 32.3
BcaC06g31207 Brassica carinata HOM05D000001 ORTHO05D000501 7.5e-16 88.6 202 31.2
Glyma.01G048200 Glycine max HOM05D000001 ORTHO05D000501 7.5e-16 88.6 189 31.2
TPR.G39194 Trifolium pratense HOM05D000001 ORTHO05D000501 7.5e-16 88.6 217 31.3
arahy.Tifrunner.gnm1.ann1.W4CKNF Arachis hypogaea HOM05D000001 ORTHO05D000501 9.8e-16 88.2 206 31.1
CsaV3_5G038060 Cucumis sativus L. HOM05D000001 ORTHO05D000501 9.8e-16 88.2 205 29.8
Os01g0897300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 9.8e-16 88.2 194 32.0
QL08p053311 Quercus lobata HOM05D000001 ORTHO05D000501 1.3e-15 87.8 189 31.7
PSO210G3490 Papaver somniferum HOM05D000001 ORTHO05D000501 1.7e-15 87.4 189 31.7
CDE07G1111 Ceratophyllum demersum HOM05D000001 ORTHO05D000501 2.2e-15 87.0 190 33.7
Zm00001eb144670 Zea mays HOM05D000001 ORTHO05D000501 2.2e-15 87.0 196 30.6
ClCG09G018200 Citrullus lanatus HOM05D000001 ORTHO05D000501 2.9e-15 86.7 209 31.1
Os01g0897200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 2.9e-15 86.7 199 29.6
Lalb_Chr10g0100211 Lupinus albus HOM05D000001 ORTHO05D000501 4.9e-15 85.9 203 29.6
MD17G1255600 Malus domestica HOM05D000001 ORTHO05D000501 4.9e-15 85.9 203 31.0
Sp2g14030 Schrenkiella parvula HOM05D000001 ORTHO05D000501 6.4e-15 85.5 202 31.2
TWI81G0775 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 8.3e-15 85.1 220 28.2
ATR0564G168 Amborella trichopoda HOM05D000001 ORTHO05D000501 1.1e-14 84.7 202 30.7
BcaC06g34026 Brassica carinata HOM05D000001 ORTHO05D000501 1.1e-14 84.7 202 30.7
A06p43340 Brassica napus HOM05D000001 ORTHO05D000501 1.1e-14 84.7 202 30.7
BraA06t27220Z Brassica rapa HOM05D000001 ORTHO05D000501 1.1e-14 84.7 202 30.7
TPR.G28358 Trifolium pratense HOM05D000001 ORTHO05D000501 1.1e-14 84.7 211 28.4
Zm00001eb144680 Zea mays HOM05D000001 ORTHO05D000501 1.1e-14 84.7 250 28.4
Cfa000442 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.4e-14 84.3 195 30.8
Dinv07638 Davidia involucrata HOM05D000001 ORTHO05D000501 1.4e-14 84.3 204 28.9
FvH4_2g17310 Fragaria vesca HOM05D000001 ORTHO05D000501 1.4e-14 84.3 206 30.6
Potri.014G174400 Populus trichocarpa HOM05D000001 ORTHO05D000501 1.4e-14 84.3 211 28.9
Atru.chr6.3496 Acer truncatum HOM05D000001 ORTHO05D000501 1.9e-14 84.0 214 28.5
Glyma.01G048400 Glycine max HOM05D000001 ORTHO05D000501 1.9e-14 84.0 189 32.8
Prupe.1G275400 Prunus persica HOM05D000001 ORTHO05D000501 1.9e-14 84.0 189 33.3
Aqoxy3G04089 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 2.4e-14 83.6 242 27.3
C07p33610 Brassica napus HOM05D000001 ORTHO05D000501 2.4e-14 83.6 202 30.2
Ca_27055_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000501 2.4e-14 83.6 200 32.5
BolC7t43871H Brassica oleracea HOM05D000001 ORTHO05D000501 3.2e-14 83.2 202 30.7
CSS0003932 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 3.2e-14 83.2 206 30.1
Medtr5g041080 Medicago truncatula HOM05D000001 ORTHO05D000501 3.2e-14 83.2 189 33.3
Carub.0005s0189 Capsella rubella HOM05D000001 ORTHO05D000501 4.1e-14 82.8 189 31.7
Medtr5g041040 Medicago truncatula HOM05D000001 ORTHO05D000501 4.1e-14 82.8 189 33.9
Psat4g159000 Pisum sativum HOM05D000001 ORTHO05D000501 4.1e-14 82.8 201 30.8
RcHm_v2.0_Chr3g0458491 Rosa chinensis HOM05D000001 ORTHO05D017917 4.1e-14 82.8 204 28.9
Sed0009372 Sechium edule HOM05D000001 ORTHO05D000501 4.1e-14 82.8 209 28.2
Sopen05g003790 Solanum pennellii HOM05D000001 ORTHO05D000501 4.1e-14 82.8 190 30.0
RcHm_v2.0_Chr6g0281821 Rosa chinensis HOM05D000001 ORTHO05D000501 5.4e-14 82.4 203 30.0
TWI18G1372 Tripterygium wilfordii HOM05D000001 ORTHO05D000501 5.4e-14 82.4 211 28.0
Manes.12G057200 Manihot esculenta HOM05D000001 ORTHO05D000501 7.1e-14 82.0 214 28.5
Medtr3g030640 Medicago truncatula HOM05D000001 ORTHO05D000501 7.1e-14 82.0 202 30.2
Prupe.8G184700 Prunus persica HOM05D000001 ORTHO05D000501 7.1e-14 82.0 201 29.9
VMungo0331G1324 Vigna mungo HOM05D000001 ORTHO05D000501 7.1e-14 82.0 198 30.8
Cfa008975 Carpinus fangiana HOM05D000001 ORTHO05D000501 9.2e-14 81.6 189 31.2
TAR371G0300 Trochodendron aralioides HOM05D000001 ORTHO05D000501 9.2e-14 81.6 189 32.3
VMungo0720G1318 Vigna mungo HOM05D000001 ORTHO05D000501 1.2e-13 81.3 196 29.6
TPR.G25368 Trifolium pratense HOM05D000001 ORTHO05D000501 2.1e-13 80.5 160 30.6
MBI04_g35343_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 2.7e-13 80.1 202 27.7
SEGI_19885 Sequoiadendron giganteum HOM05D000001 ORTHO05D000501 2.7e-13 80.1 204 32.4
SEGI_24784 Sequoiadendron giganteum HOM05D000001 ORTHO05D000501 3.5e-13 79.7 203 32.5
HPP92_003442 Vanilla planifolia HOM05D000001 ORTHO05D000501 3.5e-13 79.7 196 30.6
CANSAT25G1281 Cannabis sativa HOM05D000001 ORTHO05D000501 7.8e-13 78.6 214 27.1
Gorai.001G226100 Gossypium raimondii HOM05D000001 ORTHO05D000501 7.8e-13 78.6 222 30.2
Eucgr.H00686 Eucalyptus grandis HOM05D000001 ORTHO05D000501 1.0e-12 78.2 196 27.0
Ah.03g135020 Amaranthus hybridus HOM05D000001 ORTHO05D000501 1.3e-12 77.8 184 34.2
Migut.N00684 Erythranthe guttata HOM05D000001 ORTHO05D000501 1.3e-12 77.8 197 28.9
Medtr3g030660 Medicago truncatula HOM05D000001 ORTHO05D000501 1.3e-12 77.8 202 29.2
PSO017G0450 Papaver somniferum HOM05D000001 ORTHO05D000501 1.3e-12 77.8 249 24.9
Rhsim09G0141400 Rhododendron simsii HOM05D000001 ORTHO05D000501 1.3e-12 77.8 187 27.8
MELO3C012716.2 Cucumis melo HOM05D000001 ORTHO05D000501 2.3e-12 77.0 194 29.9
Actinidia23809 Actinidia chinensis HOM05D000001 ORTHO05D000501 3.0e-12 76.6 204 27.9
Duzib133G0742 Durio zibethinus HOM05D000001 ORTHO05D000501 3.0e-12 76.6 208 29.3
PSO675G9274 Papaver somniferum HOM05D000001 ORTHO05D000501 3.9e-12 76.3 249 24.5
Gohir.A07G195000 Gossypium hirsutum HOM05D000001 ORTHO05D000501 5.1e-12 75.9 208 29.3
Ciclev10003503m.g Citrus clementina HOM05D000001 ORTHO05D000501 6.6e-12 75.5 204 27.9
Gohir.D07G201400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 6.6e-12 75.5 208 29.3
Thecc.01G205800 Theobroma cacao HOM05D000001 ORTHO05D000501 6.6e-12 75.5 208 29.8
Ah.03g134970 Amaranthus hybridus HOM05D000001 ORTHO05D000501 1.1e-11 74.7 199 31.2
Duzib138G0079 Durio zibethinus HOM05D000001 ORTHO05D000501 1.1e-11 74.7 209 29.7
PGR083G2135 Punica granatum HOM05D000001 ORTHO05D000501 1.1e-11 74.7 196 27.0
ClCG10G015110 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.9e-11 73.9 141 33.3
CANSAT25G0184 Cannabis sativa HOM05D000001 ORTHO05D000501 2.5e-11 73.6 203 26.1
ClCG09G007980 Citrullus lanatus HOM05D000001 ORTHO05D000501 3.3e-11 73.2 221 26.7
Atru.chr5.2392 Acer truncatum HOM05D000001 ORTHO05D000501 4.3e-11 72.8 180 29.4
FAN08G1779 Fragaria x ananassa HOM05D000001 ORTHO05D000501 4.3e-11 72.8 192 30.2
TPR.G30030 Trifolium pratense HOM05D000820 ORTHO05D000760 4.3e-11 72.8 154 30.5
FvH4_5g33850 Fragaria vesca HOM05D000001 ORTHO05D000501 5.6e-11 72.4 221 29.0
Ah.02g110980 Amaranthus hybridus HOM05D000001 ORTHO05D000501 7.3e-11 72.0 210 27.1
arahy.Tifrunner.gnm1.ann1.N8IDFH Arachis hypogaea HOM05D000001 ORTHO05D000501 7.3e-11 72.0 154 31.2
FAN27G1618 Fragaria x ananassa HOM05D000328 ORTHO05D000501 7.3e-11 72.0 195 28.2
CDE09G0541 Ceratophyllum demersum HOM05D000001 ORTHO05D000501 1.6e-10 70.9 212 24.5
Gohir.A11G144400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.6e-10 70.9 219 30.1
Rhsim01G0246700 Rhododendron simsii HOM05D000001 ORTHO05D000501 1.6e-10 70.9 207 28.0
RcHm_v2.0_Chr3g0457381 Rosa chinensis HOM05D000001 ORTHO05D000501 2.1e-10 70.5 178 29.8
arahy.Tifrunner.gnm1.ann1.6AFN3K Arachis hypogaea HOM05D000328 ORTHO05D000501 3.6e-10 69.7 212 26.9
Medtr2g021750 Medicago truncatula HOM05D000172 ORTHO05D004529 3.6e-10 69.7 168 31.0
Nn3g21432 Nelumbo nucifera HOM05D000001 ORTHO05D000501 3.6e-10 69.7 203 24.1
TPR.G40636 Trifolium pratense HOM05D000820 ORTHO05D000501 4.7e-10 69.3 125 31.2
arahy.Tifrunner.gnm1.ann1.PU0L3U Arachis hypogaea HOM05D000328 ORTHO05D000191 8.1e-10 68.6 212 26.9
arahy.Tifrunner.gnm1.ann1.4JGH0F Arachis hypogaea HOM05D000001 ORTHO05D000501 1.1e-09 68.2 197 27.4
Gorai.007G161700 Gossypium raimondii HOM05D000001 ORTHO05D000501 1.1e-09 68.2 218 28.9
CANSAT25G2603 Cannabis sativa HOM05D000001 ORTHO05D000501 1.8e-09 67.4 193 25.9
AUR62005802 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.3e-09 67.0 242 29.8
CsaV3_7G027100 Cucumis sativus L. HOM05D003048 ORTHO05D003418 3.1e-09 66.6 168 26.8
FAN18G3715 Fragaria x ananassa HOM05D000001 ORTHO05D000501 3.1e-09 66.6 212 27.8
Lj6C787G16 Lonicera japonica HOM05D000001 ORTHO05D000501 4.0e-09 66.2 181 27.1
arahy.Tifrunner.gnm1.ann1.M8R2T1 Arachis hypogaea HOM05D000001 ORTHO05D000501 5.2e-09 65.9 154 29.9
unitig_0.g425 Utricularia gibba HOM05D000001 ORTHO05D000501 5.2e-09 65.9 171 29.2
VMungo0331G1376 Vigna mungo HOM05D000001 ORTHO05D000501 6.8e-09 65.5 202 25.2
AUR62032791 Chenopodium quinoa HOM05D000001 ORTHO05D000501 8.9e-09 65.1 242 29.3
TWI23G0722 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 8.9e-09 65.1 142 29.6
FAN15G3637 Fragaria x ananassa HOM05D000328 ORTHO05D000191 1.5e-08 64.3 181 25.4
MBI07_g00439_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 2.0e-08 63.9 197 25.9
MBI07_g09537_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 2.6e-08 63.5 210 25.2
Haze_14523 Corylus avellana HOM05D000181 ORTHO05D002783 3.4e-08 63.2 128 32.8
Hund09492 Selenicereus undatus HOM05D000001 ORTHO05D000501 4.4e-08 62.8 265 26.0
Medtr5g086770 Medicago truncatula HOM05D000001 ORTHO05D000501 1.3e-07 61.2 173 29.5
Nn1g09526 Nelumbo nucifera HOM05D000001 ORTHO05D000501 1.3e-07 61.2 218 24.8
Prupe.5G070500 Prunus persica HOM05D000001 ORTHO05D000501 1.7e-07 60.8 206 24.3
EL10Ac5g10576 Beta vulgaris HOM05D000001 ORTHO05D000501 2.9e-07 60.1 198 28.3
PGSC0003DMG400026334 Solanum tuberosum HOM05D010663 ORTHO05D020963 6.4e-07 58.9 201 24.4
Ciclev10003955m.g Citrus clementina HOM05D000001 ORTHO05D000501 1.1e-06 58.2 160 26.2
TWI38G0030 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 1.1e-06 58.2 224 25.9
SGA_v2.0_scaffold77G25319 Striga asiatica HOM05D000001 ORTHO05D000501 1.4e-06 57.8 171 26.9
Duzib150G0794 Durio zibethinus HOM05D002971 ORTHO05D003358 3.2e-06 56.6 124 29.8
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 5.4e-06 55.8 182 27.5
arahy.Tifrunner.gnm1.ann1.X5LBI6 Arachis hypogaea HOM05D000001 ORTHO05D000501 7.1e-06 55.5 115 33.0
Medtr5g459500 Medicago truncatula HOM05D000001 ORTHO05D000501 7.1e-06 55.5 140 22.9
AUR62028630 Chenopodium quinoa HOM05D000001 ORTHO05D000501 9.2e-06 55.1 242 23.6


User provided reference genes

Program Settings