Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.0e-81 306.6 145 100.0
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.1e-80 303.1 145 99.3
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.0e-74 282.3 174 81.0
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.0e-74 282.3 174 81.0
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.7e-66 255.4 148 81.8
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.0e-65 253.4 148 81.1
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.3e-65 253.1 143 81.8
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.0e-65 251.9 131 91.6
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 6.6e-65 250.8 145 80.7
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.9e-64 249.2 145 80.0
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.9e-64 249.2 145 80.0
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.5e-64 248.8 146 81.5
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 4.3e-64 248.1 146 81.5
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.8e-63 245.4 143 79.7
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 4.7e-63 244.6 143 79.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 4.7e-63 244.6 143 79.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.4e-62 243.0 124 90.3
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-62 242.3 142 78.9
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 2.3e-62 242.3 143 79.0
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.3e-62 242.3 147 78.2
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.3e-62 242.3 124 89.5
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.8e-62 240.7 123 88.6
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.8e-62 240.7 149 77.9
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.2e-61 240.0 145 76.6
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.5e-61 239.6 151 77.5
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.5e-61 239.6 145 75.9
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.6e-61 238.8 146 76.7
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.6e-61 238.8 146 77.4
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.4e-61 238.4 146 76.7
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 5.8e-61 237.7 147 76.2
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.8e-61 237.7 145 75.9
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.8e-61 237.7 145 75.9
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 7.5e-61 237.3 145 75.2
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 7.5e-61 237.3 151 76.8
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.7e-60 236.1 124 87.1
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 2.2e-60 235.7 147 74.1
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 3.7e-60 235.0 145 75.9
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 3.7e-60 235.0 145 75.9
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 4.9e-60 234.6 147 74.1
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 4.9e-60 234.6 145 76.6
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 4.9e-60 234.6 148 77.7
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 6.4e-60 234.2 142 75.4
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 6.4e-60 234.2 147 76.2
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 6.4e-60 234.2 145 73.1
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 6.4e-60 234.2 146 76.7
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 8.3e-60 233.8 150 76.7
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.1e-59 233.4 119 89.1
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-59 233.0 145 75.9
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.9e-59 232.6 145 73.1
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.4e-59 232.3 160 71.2
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.4e-59 232.3 122 85.2
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 3.2e-59 231.9 141 77.3
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 4.1e-59 231.5 124 84.7
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 7.1e-59 230.7 122 84.4
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 7.1e-59 230.7 146 74.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.2e-58 229.9 125 84.0
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.2e-58 229.9 122 86.9
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.2e-58 229.9 145 73.8
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.2e-58 229.9 144 74.3
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 148 75.7
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 2.1e-58 229.2 143 74.8
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.1e-58 229.2 123 84.6
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.1e-58 229.2 146 74.0
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.7e-58 228.8 132 78.8
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.7e-58 228.8 132 78.8
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 3.5e-58 228.4 143 75.5
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 4.6e-58 228.0 147 74.1
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 6.0e-58 227.6 124 83.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 6.0e-58 227.6 147 74.1
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 6.0e-58 227.6 147 73.5
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 6.0e-58 227.6 148 73.6
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.8e-58 227.3 124 83.1
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.7e-57 226.1 132 78.0
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.3e-57 225.7 140 78.6
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.3e-57 225.7 123 81.3
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 3.0e-57 225.3 135 80.0
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.0e-57 225.3 132 78.0
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 5.1e-57 224.6 125 81.6
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 5.1e-57 224.6 124 81.5
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 6.6e-57 224.2 121 82.6
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 8.6e-57 223.8 121 81.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 8.6e-57 223.8 121 81.8
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 8.6e-57 223.8 121 81.8
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 8.6e-57 223.8 118 84.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 8.6e-57 223.8 121 83.5
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 8.6e-57 223.8 122 84.4
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.1e-56 223.4 119 82.4
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.9e-56 222.6 141 73.0
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.9e-56 222.6 124 80.6
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.9e-56 222.6 124 80.6
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 3.3e-56 221.9 123 79.7
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 3.3e-56 221.9 132 77.3
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.6e-56 221.1 131 78.6
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 5.6e-56 221.1 145 70.3
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 4.7e-55 218.0 121 81.0
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 8.1e-55 217.2 135 73.3
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.8e-54 216.1 155 70.3
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.4e-54 215.7 121 81.8
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 6.8e-54 214.2 117 79.5
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.2e-53 213.4 109 86.2
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 3.4e-53 211.8 112 82.1
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 9.9e-53 210.3 116 81.0
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.9e-52 208.8 137 73.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 6.4e-52 207.6 116 80.2
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.1e-51 206.8 116 80.2
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.4e-51 206.5 103 89.3
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.4e-51 205.7 161 62.7
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 9.2e-51 203.8 114 78.9
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 2.1e-50 202.6 103 87.4
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.0e-49 200.3 155 67.1
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.3e-49 199.1 105 84.8
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 3.0e-49 198.7 120 73.3
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 3.0e-49 198.7 118 72.9
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.2e-47 193.4 104 80.8
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.6e-47 191.8 104 79.8
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.2e-47 191.0 149 63.1
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.4e-46 189.9 122 71.3
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.9e-44 182.2 147 61.2
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 3.8e-44 181.8 141 65.2
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.4e-43 179.9 114 78.1
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.4e-43 177.9 151 59.6
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 2.1e-42 176.0 91 82.4
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 3.9e-41 171.8 112 76.8
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.5e-40 169.1 112 73.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.8e-38 162.9 78 87.2
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 3.1e-38 162.2 152 57.2
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 4.5e-37 158.3 84 86.9
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 9.3e-35 150.6 99 74.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.0e-34 147.9 89 75.3
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.1e-27 127.1 104 59.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.4e-27 126.7 89 75.3
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 6.7e-25 117.9 61 78.7
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.9e-24 116.3 64 78.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 1.9e-19 99.8 72 58.3
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 1.6e-18 96.7 52 82.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.7e-18 95.9 311 27.7
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 4.3e-16 88.6 65 72.3
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 8.2e-15 84.3 50 82.0
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.8e-14 83.2 47 74.5
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.5e-11 71.6 37 91.9
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.6e-10 70.1 35 80.0
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 3.9e-09 65.5 42 66.7
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.1e-09 65.1 49 61.2
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 7.4e-08 61.2 36 80.6


User provided reference genes

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