Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 0.0e+00 1105.5 546 100.0
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.2e-279 966.1 544 89.3
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 3.1e-240 835.1 479 88.3
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.4e-239 831.6 540 74.1
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.4e-237 826.2 542 73.4
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.5e-234 816.2 542 71.8
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 7.4e-234 813.9 541 73.4
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 2.9e-230 802.0 544 71.5
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 4.9e-230 801.2 571 69.7
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 2.4e-229 798.9 542 70.7
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 7.1e-229 797.3 537 71.1
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 5.6e-226 787.7 550 73.5
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 7.4e-226 787.3 536 70.5
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 4.0e-224 781.6 536 71.6
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 9.0e-224 780.4 543 70.0
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 4.5e-223 778.1 542 68.6
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 5.8e-223 777.7 545 68.4
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.1e-221 773.5 529 70.3
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 3.2e-221 771.9 536 70.1
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 5.5e-221 771.2 535 68.4
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.0e-219 766.9 536 69.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 4.3e-218 761.5 545 67.3
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 7.4e-218 760.8 545 67.5
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.1e-217 759.2 547 67.6
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 3.7e-217 758.4 542 67.5
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 8.2e-217 757.3 537 67.8
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 2.4e-216 755.7 545 67.3
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.4e-216 755.7 545 67.0
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 2.4e-216 755.7 537 67.6
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 3.1e-216 755.4 543 68.5
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 4.1e-216 755.0 537 68.0
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 4.5e-215 751.5 540 67.0
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.1e-213 746.9 542 65.5
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.1e-213 746.9 545 65.7
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 6.1e-212 741.1 542 64.9
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 3.3e-210 735.3 540 65.4
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 4.3e-210 734.9 585 62.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 2.2e-209 732.6 537 64.6
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 2.8e-209 732.3 534 65.2
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 3.7e-209 731.9 537 67.4
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.1e-208 730.3 539 65.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 4.1e-208 728.4 536 63.1
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 5.3e-208 728.0 537 65.2
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 9.1e-208 727.2 536 63.6
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 9.1e-208 727.2 535 65.0
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 5.9e-207 724.5 537 64.6
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.3e-206 723.4 593 61.7
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.3e-206 723.4 537 65.0
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.7e-206 723.0 535 65.0
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.9e-206 722.2 537 64.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.8e-206 721.8 535 63.4
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 6.5e-206 721.1 537 64.4
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 8.5e-206 720.7 537 64.2
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.4e-205 719.9 535 63.6
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 2.5e-205 719.2 556 62.6
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 3.2e-205 718.8 514 67.7
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.2e-205 718.8 537 63.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 3.6e-204 715.3 534 64.8
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 6.1e-204 714.5 542 62.9
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.4e-203 713.4 537 63.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.4e-203 713.4 555 62.5
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 1.8e-203 713.0 537 62.4
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.6e-202 709.1 537 63.1
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 9.7e-202 707.2 537 63.9
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 8.2e-201 704.1 537 62.8
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 3.1e-200 702.2 543 61.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.2e-197 692.2 535 61.5
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 3.2e-197 692.2 540 64.1
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 6.1e-196 688.0 576 58.9
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.1e-194 683.7 543 62.8
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.7e-193 679.9 617 55.1
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 5.3e-192 674.9 463 68.7
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.8e-187 659.8 538 58.7
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.7e-185 653.3 480 64.8
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.2e-185 652.9 538 57.6
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 6.5e-182 641.3 462 64.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 4.2e-181 638.6 460 65.4
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 5.2e-179 631.7 536 56.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 4.8e-177 625.2 460 64.6
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.4e-176 623.6 581 56.8
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 7.5e-170 601.3 460 62.6
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.7e-169 600.1 463 63.3
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.3e-166 589.7 402 70.1
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 8.6e-166 587.8 464 61.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 9.5e-165 584.3 542 56.8
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 6.1e-164 581.6 533 55.7
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 9.5e-149 531.2 350 72.6
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.8e-148 529.6 511 53.4
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.5e-146 523.9 545 47.7
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 3.5e-143 512.7 539 48.4
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 1.5e-138 497.3 530 47.7
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.0e-138 496.9 534 47.8
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.4e-136 488.8 395 59.0
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 6.4e-129 465.3 480 51.0
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 9.0e-123 444.9 321 64.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.4e-120 435.6 536 46.3
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.1e-112 411.4 296 63.2
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.5e-106 391.0 355 53.5
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.2e-105 387.1 267 66.7
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.9e-105 386.7 271 67.9
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.3e-97 361.3 269 62.8
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.3e-97 361.3 689 36.1
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 3.1e-91 340.1 239 66.5
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.3e-84 318.2 518 40.2
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 2.0e-82 310.8 249 59.8
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.8e-78 297.7 566 35.9
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 5.9e-66 256.1 455 34.3
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 5.2e-62 243.0 176 65.3
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.1e-59 235.3 503 32.6
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.0e-57 226.5 168 63.1
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 4.4e-53 213.4 140 71.4
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.2e-50 205.3 122 81.1
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 5.9e-50 203.0 519 30.1
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.3e-48 196.8 534 28.8
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.9e-44 184.1 401 33.4
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.9e-32 144.8 97 71.1
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.5e-24 118.6 102 57.8
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.1e-22 112.5 89 58.4
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.3e-20 105.5 573 25.0
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.4e-20 103.2 83 57.8
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.2e-19 100.9 169 38.5
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.2e-18 99.0 186 34.9
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.3e-17 94.7 195 31.8
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 3.0e-17 94.4 105 48.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.9e-17 94.0 113 45.1
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 1.1e-16 92.4 76 59.2
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.6e-15 88.6 112 42.0
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 5.3e-14 83.6 58 55.2
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 3.4e-13 80.9 74 54.1
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.7e-12 78.6 57 64.9
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.8e-07 61.2 54 51.9
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.1e-06 57.8 46 63.0


User provided reference genes

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