Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 2368.2 1115 100.0
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 2258.4 1122 94.6
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 2230.3 1116 93.0
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 2092.8 1117 87.0
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1804.6 1114 72.5
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1800.8 1113 72.7
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1800.8 1114 72.2
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1800.0 1112 72.1
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1795.8 1109 72.6
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1792.3 1112 71.3
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1791.5 1109 72.4
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1790.4 1110 72.3
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1786.2 1111 72.0
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1785.0 1110 72.0
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1783.5 1110 72.0
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1781.5 1113 71.8
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1778.8 1125 71.2
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1767.7 1116 71.8
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1109 70.8
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1744.9 1112 69.8
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1739.9 1112 70.6
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1738.0 1113 71.2
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1737.6 1111 70.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1735.3 1118 70.3
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1734.5 1106 71.0
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1732.2 1112 70.1
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1729.9 1107 70.8
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1729.5 1114 69.8
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1729.1 1111 69.7
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1729.1 1112 69.5
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1728.4 1113 69.8
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1726.5 1112 69.6
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1722.2 1111 69.3
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1714.9 1111 69.8
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1714.5 1075 71.5
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1713.0 1111 69.6
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1110 69.7
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1709.9 1110 69.5
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1709.9 1111 69.5
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1708.0 1112 67.5
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1706.4 1114 69.8
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1699.5 1123 67.9
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1699.5 1110 69.5
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1694.5 1069 71.2
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1691.0 1099 68.4
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1690.6 1113 67.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1689.9 1102 68.6
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1689.9 1114 67.1
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1689.5 1112 67.6
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1689.1 1112 68.6
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1686.8 1112 67.2
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1686.4 1103 67.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1685.2 1113 67.8
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1682.9 1105 67.7
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1681.8 1112 67.3
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1680.6 1112 66.9
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1680.6 1111 67.2
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1676.8 1112 67.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1675.6 1111 67.3
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1674.4 1113 67.3
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1673.7 1112 67.7
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1672.5 1118 67.7
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1672.1 1125 66.8
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1671.4 1114 67.8
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1667.5 1104 67.1
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1663.3 1111 67.1
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1662.9 1069 70.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1661.0 1100 68.9
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1657.1 1226 62.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1070 69.9
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1651.7 1095 68.5
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1651.7 1106 66.9
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1624.4 1111 66.1
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1611.3 1096 65.1
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1608.2 1125 64.4
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1607.0 989 73.3
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1604.7 1094 64.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1587.8 1111 63.8
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1585.5 1127 64.5
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1584.7 1139 63.6
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1584.3 1119 63.6
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1579.7 1108 65.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1556.6 1120 62.9
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1515.4 1087 63.3
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1502.6 1164 61.3
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1479.5 998 67.6
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1424.5 901 71.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1403.3 926 67.4
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1313.5 1133 54.0
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1292.7 1035 58.1
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1289.2 1118 53.5
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1273.1 833 68.5
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1255.7 1107 53.2
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1237.2 831 67.4
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1199.5 751 71.0
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1174.5 1118 50.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1168.3 740 70.0
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1151.3 762 68.8
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1096.6 667 73.0
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.1e-308 1063.5 1136 46.6
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 8.4e-293 1010.7 694 67.0
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.6e-251 873.6 693 59.7
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.7e-240 837.0 498 75.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.3e-221 774.2 518 67.2
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 3.2e-220 769.6 518 67.2
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.0e-214 750.4 571 59.7
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 9.0e-170 602.1 1505 29.4
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 1.1e-151 542.0 385 64.9
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 3.2e-143 513.8 601 44.8
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 7.4e-132 476.1 284 74.6
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 4.4e-116 423.7 856 32.8
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.2e-113 415.6 240 76.7
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.1e-110 403.3 272 68.0
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.3e-104 385.6 828 31.5
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 2.2e-91 341.7 194 75.3
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 7.3e-87 326.6 258 57.8
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 4.9e-83 313.9 174 80.5
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 6.4e-83 313.5 201 70.6
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.3e-72 279.3 217 58.1
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.5e-65 254.6 156 69.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 3.4e-60 238.0 164 68.9
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 9.9e-60 236.5 130 78.5
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.5e-55 221.9 208 49.5
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 8.7e-48 196.8 123 69.1
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 6.0e-41 174.1 124 62.9
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.3e-35 156.4 132 53.0
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 3.8e-35 154.8 198 42.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.5e-33 148.3 173 45.1
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-30 139.8 101 60.4
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-29 136.3 151 46.4
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.4e-29 135.6 105 51.4
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.1e-29 135.2 142 47.9
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.2e-28 133.3 135 48.9
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.0e-28 132.5 75 73.3
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 2.2e-27 129.0 85 68.2
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 8.5e-27 127.1 141 48.2
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 2.5e-26 125.6 96 58.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.8e-24 119.4 154 40.9
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 6.3e-22 110.9 118 50.0
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.5e-20 104.8 53 79.2
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 5.5e-18 97.8 67 62.7
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 1.2e-17 96.7 114 44.7
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 6.7e-16 90.9 136 40.4
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.2e-14 85.9 85 51.8
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 8.2e-14 84.0 82 46.3
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 1.8e-13 82.8 61 62.3
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 9.1e-13 80.5 44 72.7
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 5.9e-12 77.8 44 72.7
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.7e-11 76.3 47 66.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 5.0e-11 74.7 44 68.2
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 1.2e-09 70.1 50 60.0
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 8.8e-08 63.9 58 55.2


User provided reference genes

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