Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1751.1 854 100.0
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1667.9 854 95.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1620.1 856 91.1
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1546.2 855 87.8
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1316.6 854 72.5
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1271.9 853 70.8
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1270.4 853 70.7
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1266.9 853 71.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1262.7 855 70.1
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1262.7 853 70.6
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1261.5 852 71.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1258.0 852 69.8
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 852 70.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1252.3 853 69.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 855 69.1
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1245.3 855 68.3
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 853 68.8
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 854 69.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 856 68.7
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 853 68.5
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1229.9 852 68.9
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1227.2 851 68.3
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1226.5 853 68.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1222.6 863 68.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 853 68.0
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 851 68.2
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1221.1 856 68.0
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 853 67.6
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 825 69.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1215.7 857 68.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1208.0 855 67.7
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1207.6 887 65.6
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1205.3 871 66.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 858 66.7
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1203.7 853 67.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1201.0 852 67.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1200.3 811 70.8
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1200.3 861 67.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1200.3 883 65.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1196.8 971 61.2
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1195.6 853 67.1
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1195.3 853 67.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1192.9 852 66.9
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1190.6 853 67.1
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 852 67.0
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 812 70.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 852 66.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 852 66.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1186.0 825 68.0
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 854 66.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 853 66.5
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 852 65.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 851 66.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1167.9 853 64.8
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1167.1 866 65.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1165.6 855 66.2
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 826 66.8
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 853 65.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1153.7 855 65.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1152.5 853 64.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1149.0 860 64.1
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1147.1 855 64.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1146.3 854 64.4
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 855 64.1
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1140.2 857 63.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1139.8 856 63.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 877 62.9
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1132.1 887 62.0
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 850 63.8
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 858 63.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1127.1 849 63.7
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 859 62.6
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1123.6 857 63.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 857 63.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 858 63.1
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1119.4 858 62.5
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 859 62.9
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 890 61.5
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1111.7 850 62.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1107.4 846 61.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1105.5 854 62.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1104.4 872 61.8
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1102.0 852 62.4
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 819 63.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1080.5 870 59.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 751 66.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1075.1 854 61.4
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 4.1e-311 1071.2 786 64.6
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.4e-310 1067.8 766 67.5
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.7e-309 1064.7 783 63.5
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.9e-309 1064.3 777 64.2
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 4.9e-309 1064.3 861 59.2
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 6.4e-309 1063.9 774 64.2
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.9e-308 1062.4 881 59.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.9e-308 1062.4 850 60.6
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 4.1e-308 1061.2 857 59.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 6.0e-307 1057.4 850 60.5
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.5e-305 1052.0 727 67.7
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.3e-305 1051.6 778 62.6
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.6e-304 1049.3 799 62.5
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 3.1e-303 1045.0 774 63.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-302 1043.1 776 62.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 8.4e-301 1036.9 837 59.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.1e-299 1032.3 810 61.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 7.8e-299 1030.4 778 62.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.3e-298 1028.9 859 60.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 8.6e-298 1026.9 776 62.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.3e-297 1025.0 718 66.3
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 4.7e-296 1021.1 805 58.9
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.2e-291 1006.5 801 60.7
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.6e-291 1004.6 769 59.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 5.6e-289 997.7 735 63.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 6.4e-285 984.2 849 56.1
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.4e-284 983.0 914 53.6
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.9e-282 974.9 853 56.0
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.1e-271 940.3 806 57.8
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.7e-267 925.6 863 54.8
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.9e-250 868.6 854 51.3
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.7e-250 867.8 651 65.0
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.3e-249 865.5 769 55.8
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.6e-243 846.7 604 68.0
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 5.7e-241 838.2 796 53.1
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.9e-236 823.2 824 49.5
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.2e-235 820.5 819 50.5
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 5.5e-228 795.0 820 48.8
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.4e-215 753.8 627 58.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 3.8e-213 745.7 774 50.3
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.0e-205 721.1 663 56.1
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.9e-205 719.2 471 70.3
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 8.1e-195 684.9 672 49.6
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.2e-193 681.0 437 70.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.8e-190 668.3 432 70.1
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 9.9e-185 651.4 481 63.8
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 6.0e-182 642.1 531 58.9
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 8.6e-181 638.3 659 51.7
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 6.4e-176 622.1 426 67.1
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.2e-174 617.8 591 53.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 6.0e-166 589.0 867 39.0
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 6.4e-160 568.9 573 52.9
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 6.9e-138 495.7 407 61.7
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 3.2e-135 486.9 778 38.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-133 481.9 320 68.1
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 8.2e-131 472.2 437 55.8
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.2e-116 425.2 333 61.3
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.0e-116 424.5 273 71.1
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.7e-112 411.4 408 53.9
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.7e-112 411.4 449 51.7
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 9.1e-106 389.0 394 55.6
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 4.7e-86 323.6 242 62.0
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.9e-82 311.6 541 35.7
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 7.0e-82 309.7 836 30.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-64 251.9 202 56.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 3.3e-63 247.7 210 59.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.8e-54 217.2 163 60.7
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.6e-52 211.5 139 69.8
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 4.8e-46 190.7 99 81.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.2e-43 181.8 193 50.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 7.1e-42 176.8 99 79.8
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.0e-32 144.8 155 45.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.5e-28 132.5 80 73.8
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.1e-25 122.1 86 65.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 8.2e-22 110.2 78 66.7
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 6.9e-21 107.1 126 48.4
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 3.8e-19 101.3 83 57.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.1e-17 95.5 84 57.1
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 6.1e-17 94.0 93 51.6
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.7e-15 87.4 62 66.1
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 9.7e-15 86.7 82 53.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.2e-14 85.5 72 59.7
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 3.5e-12 78.2 83 53.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.7e-11 75.9 95 42.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.7e-11 75.9 93 43.0
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.4e-10 72.8 41 75.6
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 3.2e-10 71.6 44 70.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.5e-10 70.9 40 77.5
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 8.0e-09 67.0 64 59.4


User provided reference genes

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