Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.7e-263 912.1 456 100.0
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 2.3e-257 891.7 456 97.8
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.4e-254 882.5 456 96.5
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.9e-244 848.2 456 92.5
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 2.1e-242 842.0 456 92.1
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 3.1e-225 785.0 456 85.7
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 4.0e-225 784.6 456 85.7
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 1.4e-222 776.2 456 84.9
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 1.9e-222 775.8 456 84.6
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 2.0e-221 772.3 455 84.0
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 5.0e-220 767.7 456 83.6
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.5e-219 766.1 461 82.9
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 2.5e-219 765.4 456 84.4
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 3.3e-219 765.0 456 84.0
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 3.3e-219 765.0 456 84.2
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.6e-219 764.2 458 82.8
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 5.6e-219 764.2 456 83.1
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 1.6e-218 762.7 456 83.1
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 2.1e-218 762.3 456 83.1
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 6.2e-218 760.8 462 83.3
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 1.1e-217 760.0 456 82.9
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 1.4e-217 759.6 456 83.8
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 1.8e-217 759.2 428 87.1
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 2.3e-217 758.8 456 83.8
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.2e-216 756.5 464 82.8
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 3.4e-216 755.0 456 83.6
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 4.4e-216 754.6 456 82.5
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 9.8e-216 753.4 462 82.5
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.3e-215 753.1 457 82.7
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 1.3e-215 753.1 457 82.7
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 1.3e-215 753.1 456 81.6
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.7e-215 752.7 457 82.7
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.7e-215 752.7 456 81.8
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.2e-215 752.3 434 85.5
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 2.2e-215 752.3 458 82.3
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 3.7e-215 751.5 458 82.1
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 3.7e-215 751.5 427 86.9
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 8.3e-215 750.4 460 82.4
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 1.1e-214 750.0 456 83.3
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 2.4e-214 748.8 449 84.0
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 3.2e-214 748.4 456 82.7
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 5.4e-214 747.7 451 82.0
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 7.1e-214 747.3 436 84.4
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.6e-213 746.1 456 82.2
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 4.6e-213 744.6 457 82.3
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.0e-212 743.4 464 79.3
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.0e-212 741.9 464 81.5
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 1.9e-211 739.2 464 81.2
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.9e-211 739.2 464 81.0
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 2.5e-211 738.8 463 79.5
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 9.5e-211 736.9 451 80.9
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 9.5e-211 736.9 437 84.4
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 9.5e-211 736.9 433 84.5
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.2e-210 736.5 451 80.5
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.2e-210 736.5 451 80.5
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.8e-210 735.3 464 80.8
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.7e-210 734.6 464 80.8
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 4.7e-210 734.6 457 80.5
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 4.7e-210 734.6 454 80.4
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 6.2e-210 734.2 457 80.5
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 8.1e-210 733.8 455 80.2
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 8.1e-210 733.8 458 80.1
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 3.1e-209 731.9 428 83.6
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 5.2e-209 731.1 455 80.0
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 6.8e-209 730.7 432 83.6
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.5e-208 729.6 457 80.1
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 2.0e-208 729.2 420 85.2
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.4e-208 728.4 457 79.9
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 7.6e-208 727.2 457 79.6
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 7.6e-208 727.2 463 78.0
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 7.6e-208 727.2 420 85.0
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 8.4e-207 723.8 468 77.8
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 1.9e-206 722.6 459 79.5
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 1.9e-206 722.6 459 79.3
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 1.9e-206 722.6 459 79.3
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 1.9e-206 722.6 459 79.5
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 2.4e-206 722.2 466 78.5
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 3.2e-206 721.8 463 78.8
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 3.2e-206 721.8 463 78.8
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 3.2e-206 721.8 427 83.4
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 5.4e-206 721.1 432 81.5
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 7.1e-206 720.7 456 78.9
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 9.2e-206 720.3 465 78.3
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 6.0e-205 717.6 461 79.6
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.3e-204 716.5 413 85.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 2.3e-204 715.7 427 82.4
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 3.0e-204 715.3 506 72.9
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 5.1e-204 714.5 428 84.3
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 5.1e-204 714.5 428 84.3
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 1.9e-203 712.6 420 82.9
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 2.5e-203 712.2 464 77.8
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 2.5e-203 712.2 461 79.6
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 9.6e-203 710.3 409 85.3
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 2.1e-202 709.1 451 78.3
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 2.8e-202 708.8 409 85.8
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 6.2e-202 707.6 479 74.1
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 1.1e-198 696.8 438 79.5
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 1.1e-193 680.2 391 84.9
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 2.9e-191 672.2 456 74.8
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 9.3e-190 667.2 383 85.6
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 3.9e-188 661.8 383 84.9
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 6.7e-188 661.0 455 75.6
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 5.6e-187 657.9 524 66.8
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 3.7e-186 655.2 397 82.1
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.0e-184 649.4 436 76.4
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 3.4e-184 648.7 459 73.2
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 1.3e-183 646.7 460 73.3
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 3.8e-183 645.2 436 74.3
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 8.7e-180 634.0 425 74.8
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 2.8e-178 629.0 432 74.1
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 8.2e-178 627.5 457 70.5
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 1.4e-177 626.7 413 75.8
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 5.8e-176 621.3 414 75.1
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.3e-175 620.2 436 71.8
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 1.7e-175 619.8 457 71.6
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.5e-174 615.9 409 73.8
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.2e-173 613.6 330 92.1
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.8e-169 599.7 410 71.5
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.8e-162 575.9 465 66.9
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.9e-158 563.1 425 69.2
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.8e-146 522.7 559 53.8
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 4.8e-146 521.9 427 60.0
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 5.7e-139 498.4 331 76.4
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 2.7e-133 479.6 410 58.8
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.0e-124 451.1 369 62.3
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 9.5e-118 427.9 401 56.6
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 2.3e-111 406.8 414 52.2
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 6.6e-111 405.2 261 77.0
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.2e-107 394.4 410 53.7
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.0e-107 393.7 251 78.1
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.8e-77 293.5 188 79.3
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 1.8e-76 290.8 173 83.2
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 2.4e-76 290.4 310 52.6
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 9.0e-76 288.5 387 41.9
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 6.2e-61 239.2 357 40.9
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 3.4e-59 233.4 155 72.9
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 3.9e-47 193.4 117 83.8
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.3e-45 188.3 386 34.5
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.3e-30 137.1 72 90.3
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 5.7e-30 136.3 83 77.1
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 1.6e-27 128.3 68 91.2
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 1.7e-26 124.8 81 81.5
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 8.8e-23 112.5 105 61.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 3.3e-22 110.5 76 72.4
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 7.0e-20 102.8 66 83.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.0e-16 89.4 296 26.7
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 6.8e-15 86.3 61 70.5
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 2.6e-14 84.3 59 74.6
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 1.1e-09 68.9 50 66.0
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 9.5e-09 65.9 74 51.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 2.8e-08 64.3 76 48.7
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 2.8e-08 64.3 76 48.7
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 1.5e-06 58.5 44 68.2
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 2.0e-06 58.2 156 28.2
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.6e-06 57.8 162 25.9
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 5.7e-06 56.6 156 28.2
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.7e-06 56.6 156 27.6
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 5.7e-06 56.6 160 25.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 7.5e-06 56.2 162 26.5
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 9.8e-06 55.8 160 26.2


User provided reference genes

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