Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G020680 Cucumis sativus L. HOM05D001439 ORTHO05D007599 1.5e-56 222.6 113 100.0
CsaV3_7G023680 Cucumis sativus L. HOM05D001439 ORTHO05D007599 1.1e-51 206.5 113 94.7
MELO3C024106.2 Cucumis melo HOM05D001439 ORTHO05D007599 1.0e-49 199.9 113 91.2
ClCG09G010560 Citrullus lanatus HOM05D001439 ORTHO05D007599 8.5e-44 180.3 113 85.8
Sed0014026 Sechium edule HOM05D001439 ORTHO05D007599 5.7e-40 167.5 112 78.6
FAN14G5546 Fragaria x ananassa HOM05D001439 ORTHO05D007599 4.4e-32 141.4 113 61.1
FAN05G2787 Fragaria x ananassa HOM05D001439 ORTHO05D007599 7.5e-32 140.6 113 60.2
FAN02G0189 Fragaria x ananassa HOM05D001439 ORTHO05D007599 1.7e-31 139.4 113 60.2
FAN14G5823 Fragaria x ananassa HOM05D001439 ORTHO05D007599 1.7e-31 139.4 113 60.2
FAN09G0293 Fragaria x ananassa HOM05D001439 ORTHO05D007599 3.7e-31 138.3 113 60.2
RcHm_v2.0_Chr2g0148261 Rosa chinensis HOM05D001439 ORTHO05D007599 4.9e-31 137.9 113 61.1
FvH4_6g36260 Fragaria vesca HOM05D001439 ORTHO05D007599 8.3e-31 137.1 113 60.2
QL04p042996 Quercus lobata HOM05D001439 ORTHO05D007599 2.0e-29 132.5 112 62.5
Prupe.3G029400 Prunus persica HOM05D001439 ORTHO05D007599 5.9e-29 131.0 113 57.5
CANSAT56G1506 Cannabis sativa HOM05D001439 ORTHO05D007599 5.0e-28 127.9 113 60.2
CANSAT56G2417 Cannabis sativa HOM05D001439 ORTHO05D007599 5.0e-28 127.9 113 60.2
Potri.014G173300 Populus trichocarpa HOM05D001439 ORTHO05D007599 8.6e-28 127.1 113 58.4
Cfa002303 Carpinus fangiana HOM05D001439 ORTHO05D007599 2.5e-27 125.6 111 60.4
Sabra14G0132600 Salix brachista HOM05D001439 ORTHO05D007599 2.5e-27 125.6 113 57.5
Haze_24510 Corylus avellana HOM05D001439 ORTHO05D007599 9.5e-27 123.6 111 60.4
Nn4g24992 Nelumbo nucifera HOM05D001439 ORTHO05D007599 1.0e-25 120.2 113 55.8
Ciclev10014094m.g Citrus clementina HOM05D001439 ORTHO05D007599 4.0e-25 118.2 113 55.8
MD17G1156400 Malus domestica HOM05D001439 ORTHO05D007599 4.0e-25 118.2 113 54.9
TAR375G1143 Trochodendron aralioides HOM05D001439 ORTHO05D007599 1.5e-24 116.3 113 55.8
arahy.Tifrunner.gnm1.ann1.CH5A50 Arachis hypogaea HOM05D001439 ORTHO05D007599 3.4e-24 115.2 113 54.9
MD09G1170800 Malus domestica HOM05D001439 ORTHO05D007599 3.4e-24 115.2 113 54.0
arahy.Tifrunner.gnm1.ann1.0SQJ2Y Arachis hypogaea HOM05D001439 ORTHO05D007599 4.4e-24 114.8 113 54.0
Glyma.05G221500 Glycine max HOM05D001439 ORTHO05D007599 4.4e-24 114.8 113 52.2
TPR.G22823 Trifolium pratense HOM05D001439 ORTHO05D007599 2.2e-23 112.5 113 51.3
Lalb_Chr05g0223731 Lupinus albus HOM05D001439 ORTHO05D007599 3.7e-23 111.7 113 51.3
GSVIVG01036776001 Vitis vinifera HOM05D001439 ORTHO05D007599 4.9e-23 111.3 113 54.0
Psat7g021400 Pisum sativum HOM05D001439 ORTHO05D007599 1.1e-22 110.2 113 51.3
Glyma.08G028000 Glycine max HOM05D001439 ORTHO05D007599 1.4e-22 109.8 113 49.6
Atru.chr6.3472 Acer truncatum HOM05D001439 ORTHO05D007599 3.2e-22 108.6 113 55.8
Cpa.g.sc8.11 Carica papaya HOM05D001439 ORTHO05D007599 5.4e-22 107.8 113 51.3
Phvul.002G303200 Phaseolus vulgaris HOM05D001439 ORTHO05D007599 1.6e-21 106.3 113 47.8
Eucgr.K01361 Eucalyptus grandis HOM05D001439 ORTHO05D007599 3.5e-21 105.1 113 51.3
Ca_17413_v3 Cicer arietinum L. HOM05D001439 ORTHO05D007599 5.9e-21 104.4 113 48.7
Thecc.01G203900 Theobroma cacao HOM05D001439 ORTHO05D007599 7.8e-21 104.0 113 52.2
TWI36G0060 Tripterygium wilfordii HOM05D001439 ORTHO05D007599 5.0e-20 101.3 113 48.7
Duzib138G1511 Durio zibethinus HOM05D001439 ORTHO05D007599 6.6e-20 100.9 113 53.1
Manes.12G058700 Manihot esculenta HOM05D001439 ORTHO05D007599 6.6e-20 100.9 113 50.4
VMungo0251G2358 Vigna mungo HOM05D001439 ORTHO05D007599 1.1e-19 100.1 113 46.0
PGR044G2616 Punica granatum HOM05D001439 ORTHO05D007599 2.5e-19 99.0 113 47.8
TWI18G1300 Tripterygium wilfordii HOM05D001439 ORTHO05D007599 3.3e-19 98.6 113 53.1
Actinidia06779 Actinidia chinensis HOM05D001439 ORTHO05D007599 4.3e-19 98.2 113 49.6
Duzib133G1111 Durio zibethinus HOM05D001439 ORTHO05D007599 5.6e-19 97.8 113 53.1
Hma1.2p1_0345F.1_g131230 Hydrangea macrophylla HOM05D001439 ORTHO05D007599 5.6e-19 97.8 113 48.7
Hma1.2p1_0345F.1_g131250 Hydrangea macrophylla HOM05D001439 ORTHO05D007599 5.6e-19 97.8 113 48.7
Lj4g0024460 Lotus japonicus HOM05D001439 ORTHO05D007599 7.3e-19 97.4 113 46.0
Gorai.007G162700 Gossypium raimondii HOM05D001439 ORTHO05D007599 9.5e-19 97.1 113 51.3
Gohir.A11G145900 Gossypium hirsutum HOM05D001439 ORTHO05D007599 1.2e-18 96.7 113 51.3
Dinv30126 Davidia involucrata HOM05D001439 ORTHO05D007599 1.6e-18 96.3 112 49.1
THA.LOC104826638 Tarenaya hassleriana HOM05D001439 ORTHO05D007599 2.8e-18 95.5 114 52.6
Actinidia03300 Actinidia chinensis HOM05D001439 ORTHO05D007599 6.2e-18 94.4 114 47.4
MBI18_g11240_MAGBIO Magnolia biondii HOM05D001439 ORTHO05D007599 1.1e-17 93.6 113 46.0
Lj2A362T44 Lonicera japonica HOM05D001439 ORTHO05D007599 3.1e-17 92.0 114 49.1
CSS0026010 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D007599 5.2e-17 91.3 113 47.8
Aqoxy1G03116 Aquilegia oxysepala HOM05D001439 ORTHO05D007599 1.2e-16 90.1 113 46.0
Cc02_g09100 Coffea canephora HOM05D001439 ORTHO05D007599 1.2e-16 90.1 113 47.8
Gohir.D11G152000 Gossypium hirsutum HOM05D001439 ORTHO05D007599 5.8e-16 87.8 113 49.6
Sc09g0004660 Simmondsia chinensis HOM05D001439 ORTHO05D007599 5.8e-16 87.8 113 46.0
EL10Ac4g08849 Beta vulgaris HOM05D001439 ORTHO05D007599 7.5e-16 87.4 113 46.0
AL9U11900 Arabidopsis lyrata HOM05D001439 ORTHO05D007599 3.7e-15 85.1 115 50.4
PSO063G6089 Papaver somniferum HOM05D001439 ORTHO05D007599 8.3e-15 84.0 113 40.7
Carub.0007s3007 Capsella rubella HOM05D001439 ORTHO05D007599 1.4e-14 83.2 115 49.6
PSO782G0625 Papaver somniferum HOM05D001439 ORTHO05D007599 1.4e-14 83.2 113 40.7
Oeu016030.1 Olea europaea HOM05D001439 ORTHO05D007599 2.4e-14 82.4 114 48.2
Thhalv10024262m.g Eutrema salsugineum HOM05D001439 ORTHO05D007599 3.2e-14 82.0 114 48.2
AT4G12750 Arabidopsis thaliana HOM05D001439 ORTHO05D007599 4.1e-14 81.6 115 49.6
THA.LOC104815378 Tarenaya hassleriana HOM05D001439 ORTHO05D007599 5.4e-14 81.3 114 50.0
COL.COLO4_19723 Corchorus olitorius HOM05D001439 ORTHO05D007599 9.2e-14 80.5 113 45.1
Hund22225 Selenicereus undatus HOM05D001439 ORTHO05D007599 9.2e-14 80.5 111 42.3
Aa31sc565G40 Aethionema arabicum HOM05D001439 ORTHO05D007599 1.2e-13 80.1 115 47.8
CARHR218110 Cardamine hirsuta HOM05D001439 ORTHO05D007599 4.6e-13 78.2 114 47.4
Nitab4.5_0005417g0010 Nicotiana tabacum HOM05D001439 ORTHO05D007599 4.6e-13 78.2 117 47.9
CAN.G1256.6 Capsicum annuum HOM05D001439 ORTHO05D007599 1.3e-12 76.6 117 47.0
Nitab4.5_0003799g0010 Nicotiana tabacum HOM05D001439 ORTHO05D007599 8.6e-12 73.9 117 46.2
Ah.04g162790 Amaranthus hybridus HOM05D001439 ORTHO05D007599 1.5e-11 73.2 113 42.5
Lalb_Chr09g0331921 Lupinus albus HOM05D001439 ORTHO05D007599 2.5e-11 72.4 113 40.7
AUR62037546 Chenopodium quinoa HOM05D001439 ORTHO05D007599 4.3e-11 71.6 113 38.1
Sp7g09140 Schrenkiella parvula HOM05D001439 ORTHO05D007599 7.3e-11 70.9 114 45.6
Solyc11g006200.2 Solanum lycopersicum HOM05D001439 ORTHO05D007599 1.6e-10 69.7 117 43.6
Sopen11g002130 Solanum pennellii HOM05D001439 ORTHO05D007599 1.6e-10 69.7 117 43.6
AUR62035538 Chenopodium quinoa HOM05D001439 ORTHO05D007599 2.1e-10 69.3 113 37.2
PGSC0003DMG400000999 Solanum tuberosum HOM05D001439 ORTHO05D007599 3.6e-10 68.6 114 42.1
vmacro10348 Vaccinium macrocarpon HOM05D001439 ORTHO05D007599 6.2e-10 67.8 113 38.1
DCAR_028382 Daucus carota HOM05D001439 ORTHO05D007599 8.1e-10 67.4 113 38.1
Migut.F00815 Erythranthe guttata HOM05D001439 ORTHO05D007599 1.8e-09 66.2 115 42.6
SHI10198 Sapria himalayana HOM05D001439 ORTHO05D007599 1.8e-09 66.2 112 40.2
Lsat_1_v5_gn_2_107580 Lactuca sativa HOM05D001439 ORTHO05D007599 3.1e-09 65.5 113 40.7
CDE01G0356 Ceratophyllum demersum HOM05D001439 ORTHO05D007599 4.0e-09 65.1 113 36.3
MSTRG.9529 Avicennia marina HOM05D001439 ORTHO05D007599 1.2e-08 63.5 113 39.8
SGA_v2.0_scaffold90G27703 Striga asiatica HOM05D000200 ORTHO05D000262 1.5e-08 63.2 113 36.3
ATR1098G049 Amborella trichopoda HOM05D001439 ORTHO05D007599 4.4e-08 61.6 114 36.0
HanXRQChr07g0200581 Helianthus annuus HOM05D001439 ORTHO05D007599 4.4e-08 61.6 113 38.1
BcaB04g17209 Brassica carinata HOM05D001439 ORTHO05D007599 9.9e-08 60.5 116 42.2
BcaC01g01268 Brassica carinata HOM05D001439 ORTHO05D007599 1.3e-07 60.1 116 41.4
C03p90000 Brassica napus HOM05D001439 ORTHO05D007599 1.3e-07 60.1 116 41.4
BolC3t21320H Brassica oleracea HOM05D001439 ORTHO05D007599 1.3e-07 60.1 116 41.4
CDE02G2880 Ceratophyllum demersum HOM05D001439 ORTHO05D007599 1.3e-07 60.1 113 35.4
Zm00001eb061430 Zea mays HOM05D001439 ORTHO05D007599 1.3e-07 60.1 122 34.4
BraA08t32320Z Brassica rapa HOM05D001439 ORTHO05D007599 2.9e-07 58.9 116 41.4
A08p02880 Brassica napus HOM05D001439 ORTHO05D007599 3.7e-07 58.5 116 41.4
ECA238G3650 Erigeron canadensis HOM05D001439 ORTHO05D007599 3.7e-07 58.5 113 38.1
HanXRQChr14g0455641 Helianthus annuus HOM05D001439 ORTHO05D007599 8.3e-07 57.4 114 36.8
MSTRG.9006 Avicennia marina HOM05D001439 ORTHO05D007599 3.2e-06 55.5 113 38.9
unitig_46.g18727 Utricularia gibba HOM05D001439 ORTHO05D007599 7.1e-06 54.3 98 36.7


User provided reference genes

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