Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 6.8e-180 634.8 317 100.0
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 4.3e-158 562.4 317 89.9
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.6e-152 543.9 319 86.2
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 8.7e-135 485.0 316 78.5
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 1.2e-83 315.1 330 53.9
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 2.0e-83 314.3 324 52.2
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 7.8e-83 312.4 325 52.3
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 1.7e-82 311.2 320 51.9
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.8e-82 310.1 321 51.1
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.5e-81 308.1 318 51.3
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 6.1e-80 302.8 303 54.5
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 1.8e-79 301.2 321 49.5
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.7e-77 294.7 326 47.9
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 2.2e-77 294.3 321 50.2
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 4.9e-77 293.1 322 48.1
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.4e-76 291.6 326 47.5
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 4.1e-76 290.0 285 50.2
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 7.0e-76 289.3 316 50.6
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 9.2e-76 288.9 329 49.8
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.7e-75 287.3 317 52.1
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 2.7e-75 287.3 308 51.6
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 3.5e-75 287.0 305 46.9
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 5.9e-75 286.2 327 48.3
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.3e-74 284.3 314 51.6
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 3.0e-74 283.9 329 50.8
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 5.0e-74 283.1 314 51.0
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 5.0e-74 283.1 328 47.3
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 5.0e-74 283.1 322 47.2
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 8.6e-74 282.3 341 44.3
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.1e-73 282.0 297 51.9
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 5.6e-73 279.6 295 50.2
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 7.3e-73 279.3 308 49.0
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 4.7e-72 276.6 312 49.0
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 8.0e-72 275.8 324 47.2
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 1.1e-71 275.4 327 48.6
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 1.4e-71 275.0 323 47.4
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 4.0e-71 273.5 340 43.8
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 5.2e-71 273.1 323 46.4
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 6.8e-71 272.7 343 44.9
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.2e-70 271.9 340 43.8
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.5e-70 271.6 325 47.4
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 7.5e-70 269.2 321 47.0
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 3.7e-69 266.9 299 46.8
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 4.6e-67 260.0 289 47.1
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 6.0e-67 259.6 343 43.7
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 2.3e-66 257.7 320 46.6
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 5.0e-66 256.5 203 60.1
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 6.6e-66 256.1 328 43.9
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 4.3e-65 253.4 321 43.9
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 2.1e-64 251.1 352 42.3
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 2.0e-62 244.6 321 44.2
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 3.4e-62 243.8 286 44.1
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 4.4e-62 243.4 296 45.6
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 1.7e-61 241.5 310 42.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 3.7e-61 240.4 312 41.0
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 1.1e-60 238.8 241 47.7
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 1.4e-60 238.4 302 45.0
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 3.2e-60 237.3 305 42.3
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 4.1e-60 236.9 244 51.2
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 9.2e-60 235.7 298 41.9
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.6e-59 235.0 261 49.0
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 1.7e-58 231.5 323 41.8
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 2.3e-58 231.1 312 42.0
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.5e-57 228.4 330 41.5
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.5e-57 228.4 330 41.8
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 4.3e-57 226.9 330 40.9
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 3.6e-56 223.8 330 40.9
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 5.2e-55 219.9 325 40.9
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 2.9e-53 214.2 241 46.9
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.9e-53 213.4 246 44.3
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 4.9e-53 213.4 263 43.0
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 4.9e-53 213.4 268 41.8
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 6.4e-53 213.0 223 48.9
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 8.4e-53 212.6 241 46.9
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 5.4e-52 209.9 278 44.2
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 2.7e-51 207.6 320 40.0
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 3.5e-51 207.2 279 41.6
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 4.6e-51 206.8 313 39.0
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 4.6e-51 206.8 277 42.2
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 1.3e-50 205.3 266 42.9
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.1e-49 202.2 276 40.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.1e-49 202.2 239 43.1
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.9e-49 201.4 276 40.6
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 2.5e-49 201.1 277 41.5
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 2.5e-49 201.1 277 41.5
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 5.2e-47 193.4 212 47.6
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 4.4e-46 190.3 302 39.7
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 4.2e-44 183.7 214 42.5
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.6e-43 181.8 321 36.4
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 8.7e-42 176.0 279 36.9
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 5.6e-41 173.3 320 35.3
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.1e-40 171.4 319 33.9
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.8e-34 151.8 282 33.3
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.8e-30 136.7 105 62.9
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 5.8e-30 136.7 117 52.1
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.9e-29 134.4 105 59.0
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 6.4e-29 133.3 105 60.0
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 3.7e-24 117.5 107 52.3
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 1.4e-20 105.5 315 31.4
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 1.9e-09 68.6 130 30.0
Potri.005G187800 Populus trichocarpa HOM05D000001 ORTHO05D000003 5.9e-06 57.0 131 24.4
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 7.7e-06 56.6 110 26.4


User provided reference genes

Program Settings