Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 2.7e-283 978.0 494 100.0
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 6.2e-256 887.1 494 90.5
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.3e-226 789.6 421 94.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.4e-212 743.0 516 73.1
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 8.7e-210 733.8 513 72.7
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 8.7e-210 733.8 517 72.0
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 4.3e-209 731.5 529 70.1
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.8e-208 728.8 528 71.2
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.8e-208 728.8 515 72.8
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.8e-208 728.8 517 71.6
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 3.7e-208 728.4 515 72.2
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 3.7e-208 728.4 528 71.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.1e-207 726.9 515 72.4
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.4e-207 726.5 516 71.3
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 1.0e-205 720.3 515 70.7
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.0e-205 720.3 515 71.7
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.3e-205 719.9 515 70.5
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 6.5e-205 717.6 529 68.8
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.5e-204 715.7 514 70.8
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 7.2e-204 714.1 528 70.6
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 7.2e-204 714.1 511 70.5
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 7.2e-204 714.1 507 71.2
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 2.1e-203 712.6 514 70.4
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.6e-203 711.4 517 70.0
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 7.9e-203 710.7 504 70.8
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 1.4e-202 709.9 511 70.8
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.3e-202 709.1 515 70.3
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.3e-202 709.1 528 69.9
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 2.3e-202 709.1 528 69.7
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 8.8e-202 707.2 529 69.6
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 8.8e-202 707.2 515 70.1
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 8.8e-202 707.2 516 70.7
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 8.8e-202 707.2 515 70.5
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.1e-201 706.8 524 69.1
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 1.1e-201 706.8 516 70.5
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 4.4e-201 704.9 527 68.5
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 4.4e-201 704.9 515 70.1
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.7e-200 703.0 514 70.4
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 2.8e-200 702.2 526 68.8
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 8.2e-200 700.7 512 70.3
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 4.1e-199 698.4 528 68.6
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 5.3e-199 698.0 515 69.3
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.5e-198 696.4 528 67.8
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 6.5e-197 691.0 566 64.1
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 3.2e-196 688.7 515 67.8
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 7.2e-196 687.6 558 64.3
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.2e-195 686.8 512 68.8
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.2e-195 686.8 505 69.3
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 3.6e-195 685.3 512 68.9
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 6.1e-195 684.5 505 69.3
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 7.9e-195 684.1 516 67.2
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.8e-194 682.9 525 67.4
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 5.2e-194 681.4 509 68.2
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.5e-193 679.9 530 66.2
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 5.7e-193 677.9 512 68.8
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 9.7e-193 677.2 529 66.0
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 2.2e-192 676.0 515 66.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 8.2e-192 674.1 510 67.6
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.4e-191 673.3 505 68.9
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.6e-190 669.1 534 64.8
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 5.9e-190 667.9 515 65.6
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.3e-189 666.8 512 63.9
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.8e-189 665.2 510 65.9
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-188 663.7 510 66.3
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 3.2e-188 662.1 510 66.1
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 7.2e-188 661.0 510 65.9
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 9.4e-188 660.6 511 65.8
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.7e-187 659.1 510 65.5
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.7e-187 659.1 512 63.9
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.0e-186 657.1 510 65.7
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.8e-186 656.4 529 64.5
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.2e-186 654.8 510 66.1
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.2e-185 653.7 496 66.1
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.7e-185 651.4 511 65.4
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 2.8e-184 649.0 494 68.6
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 3.7e-184 648.7 505 66.1
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 3.7e-184 648.7 530 63.6
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 6.3e-184 647.9 500 66.4
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 4.1e-183 645.2 539 62.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 9.1e-183 644.0 512 63.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.0e-182 642.9 457 71.6
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.3e-181 640.2 499 64.7
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.9e-181 639.0 486 67.1
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.8e-181 638.6 512 63.1
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.9e-180 636.3 498 65.1
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 5.5e-180 634.8 526 63.1
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 8.0e-179 630.9 505 64.6
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.0e-178 630.6 505 62.4
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.8e-178 629.8 503 65.0
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.0e-178 628.6 499 63.5
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 3.4e-177 625.5 547 61.1
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 5.7e-177 624.8 501 63.9
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.7e-176 623.2 496 63.1
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 4.8e-176 621.7 501 63.7
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.7e-174 615.9 432 76.4
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.5e-172 610.1 510 62.0
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 5.5e-172 608.2 506 62.8
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 9.5e-172 607.4 524 60.9
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.8e-171 605.9 517 62.7
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 6.1e-171 604.7 506 62.3
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 2.3e-170 602.8 496 62.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-165 586.3 491 61.5
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.5e-164 582.8 518 58.9
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.4e-162 577.0 515 60.6
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 6.8e-162 574.7 524 58.0
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.4e-161 572.4 432 68.3
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 4.6e-158 562.0 512 59.4
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.1e-156 557.4 439 64.7
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 2.8e-155 552.7 430 66.3
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 7.5e-153 544.7 483 60.0
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.1e-132 477.6 355 69.9
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.5e-121 440.7 515 47.8
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 3.2e-119 433.0 390 57.9
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 8.7e-117 424.9 530 45.3
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 5.8e-113 412.1 492 45.5
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 1.1e-106 391.3 388 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 7.2e-95 352.1 471 41.8
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 3.7e-91 339.7 469 45.8
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 4.8e-59 233.0 139 81.3
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 1.4e-45 188.3 420 35.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 6.0e-41 172.9 123 67.5
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 2.1e-38 164.5 137 65.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.9e-31 141.4 239 39.3
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 4.7e-30 136.7 72 98.6
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 7.1e-26 122.9 79 75.9
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.3e-24 118.6 76 72.4
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 2.5e-23 114.4 73 75.3
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-22 112.1 104 60.6
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-21 105.9 153 35.9
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 1.5e-20 105.1 99 55.6
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 4.0e-13 80.5 240 28.8
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-10 70.5 53 54.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.0e-08 64.3 111 38.7
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 9.6e-07 59.3 46 65.2


User provided reference genes

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