Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 3.4e-80 301.6 152 100.0
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 7.8e-16 87.8 47 89.4
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.3e-15 87.0 47 89.4
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.3e-15 87.0 47 89.4
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-13 80.1 43 100.0
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-13 80.1 43 100.0
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-13 80.1 43 100.0
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-13 80.1 43 100.0
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-13 80.1 43 100.0
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-13 80.1 43 100.0
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 50 76.0
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.8e-13 79.3 47 80.9
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.6e-13 79.0 50 74.0
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 1.0e-12 77.4 43 95.3
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.8e-12 76.6 47 78.7
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 2.3e-12 76.3 43 93.0
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.3e-12 76.3 47 78.7
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 2.3e-12 76.3 43 95.3
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 2.3e-12 76.3 43 95.3
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 2.3e-12 76.3 43 95.3
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.2e-12 75.1 47 76.6
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 5.2e-12 75.1 43 90.7
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 5.2e-12 75.1 43 93.0
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.8e-12 74.7 43 93.0
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.8e-12 74.7 43 93.0
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.8e-12 74.7 43 93.0
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.8e-12 74.7 43 93.0
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 6.8e-12 74.7 45 80.0
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 6.8e-12 74.7 43 93.0
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 6.8e-12 74.7 43 93.0
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.2e-11 73.9 43 79.1
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.2e-11 73.9 47 76.6
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 1.2e-11 73.9 43 90.7
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.5e-11 73.6 43 90.7
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.5e-11 73.6 43 90.7
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 2.0e-11 73.2 43 93.0
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 2.0e-11 73.2 43 90.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-11 73.2 47 74.5
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-11 73.2 47 74.5
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-11 73.2 47 74.5
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-11 73.2 47 74.5
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 2.0e-11 73.2 43 93.0
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 2.0e-11 73.2 43 90.7
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 2.0e-11 73.2 43 90.7
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.6e-11 72.8 47 74.5
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.6e-11 72.8 47 74.5
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 2.6e-11 72.8 47 74.5
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 2.6e-11 72.8 47 74.5
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 2.6e-11 72.8 43 88.4
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 3.4e-11 72.4 50 70.0
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.4e-11 72.4 43 88.4
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 3.4e-11 72.4 43 88.4
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 3.4e-11 72.4 43 83.7
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 4.4e-11 72.0 43 88.4
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 4.4e-11 72.0 43 88.4
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 5.7e-11 71.6 44 79.5
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 7.5e-11 71.2 43 88.4
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 7.5e-11 71.2 42 90.5
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 9.8e-11 70.9 42 78.6
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 9.8e-11 70.9 43 81.4
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.3e-10 70.5 39 94.9
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.3e-10 70.5 43 83.7
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 1.3e-10 70.5 43 86.0
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.7e-10 70.1 41 80.5
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.7e-10 70.1 43 81.4
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 2.9e-10 69.3 43 76.7
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 2.9e-10 69.3 43 81.4
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 3.7e-10 68.9 43 79.1
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 4.9e-10 68.6 43 86.0
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 4.9e-10 68.6 43 76.7
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 4.9e-10 68.6 43 76.7
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 4.9e-10 68.6 43 76.7
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 6.4e-10 68.2 50 74.0
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 6.4e-10 68.2 47 70.2
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.4e-10 68.2 43 79.1
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 8.3e-10 67.8 43 86.0
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 8.3e-10 67.8 43 79.1
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 1.1e-09 67.4 43 76.7
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 1.1e-09 67.4 43 74.4
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.4e-09 67.0 42 76.2
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 1.4e-09 67.0 42 85.7
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.4e-09 67.0 43 74.4
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 1.8e-09 66.6 43 81.4
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.8e-09 66.6 43 72.1
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.4e-09 66.2 43 74.4
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 3.2e-09 65.9 43 83.7
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 4.1e-09 65.5 39 84.6
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 4.1e-09 65.5 39 84.6
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 4.1e-09 65.5 43 72.1
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 5.4e-09 65.1 41 75.6
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 5.4e-09 65.1 43 81.4
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 5.4e-09 65.1 47 72.3
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 5.4e-09 65.1 47 72.3
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 5.4e-09 65.1 47 72.3
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 9.2e-09 64.3 41 75.6
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 1.2e-08 63.9 41 73.2
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 1.2e-08 63.9 43 81.4
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.6e-08 63.5 42 76.2
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.6e-08 63.5 43 72.1
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.6e-08 63.5 41 73.2
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-08 63.5 47 63.8
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.6e-08 63.5 42 71.4
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 2.0e-08 63.2 43 81.4
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.7e-08 62.8 41 73.2
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.7e-08 62.8 41 73.2
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.7e-08 62.8 43 69.8
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.5e-08 62.4 40 72.5
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 3.5e-08 62.4 43 81.4
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.6e-08 62.0 36 80.6
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.6e-08 62.0 42 71.4
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 5.9e-08 61.6 36 80.6
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 5.9e-08 61.6 36 80.6
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 5.9e-08 61.6 43 69.8
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 5.9e-08 61.6 41 82.9
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 7.8e-08 61.2 41 82.9
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.8e-08 61.2 47 61.7
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.8e-08 61.2 47 61.7
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.8e-08 61.2 47 61.7
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.0e-07 60.8 36 80.6
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 3.0e-07 59.3 41 78.0
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 3.9e-07 58.9 47 66.0
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 5.0e-07 58.5 39 82.1
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.0e-07 58.5 31 87.1
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.9e-06 56.6 33 78.8
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 2.5e-06 56.2 43 65.1
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 4.3e-06 55.5 39 66.7
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 4.3e-06 55.5 39 66.7
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 4.3e-06 55.5 39 66.7


User provided reference genes

Program Settings