Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 5.1e-145 517.7 258 100.0
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 2.6e-136 488.8 261 94.6
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 1.3e-132 476.5 261 90.8
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 2.7e-122 442.2 262 84.7
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.3e-87 327.0 262 61.1
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 1.6e-85 320.1 262 59.9
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 2.7e-85 319.3 263 63.9
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 5.6e-83 311.6 263 62.4
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 9.6e-83 310.8 263 62.0
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 9.6e-83 310.8 262 58.8
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 1.2e-82 310.5 262 60.3
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 1.2e-82 310.5 263 61.6
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 2.1e-82 309.7 256 61.3
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 1.4e-81 307.0 256 60.9
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.4e-81 307.0 256 60.9
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.8e-81 306.6 256 60.5
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.1e-81 305.8 256 60.5
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 8.9e-81 304.3 262 59.9
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.2e-80 303.9 256 59.8
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 2.0e-80 303.1 262 58.4
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 4.4e-80 302.0 263 60.8
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 4.4e-80 302.0 262 58.8
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.6e-80 301.2 256 60.2
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.6e-80 301.2 256 60.2
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 2.9e-79 299.3 258 60.5
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 4.9e-79 298.5 264 59.5
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 8.4e-79 297.7 258 60.1
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 8.4e-79 297.7 256 60.5
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.4e-78 297.0 264 59.1
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 7.1e-78 294.7 256 59.0
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 1.2e-77 293.9 260 59.2
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 2.1e-77 293.1 258 59.3
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 3.5e-77 292.4 258 59.3
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 6.0e-77 291.6 263 59.3
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.7e-76 290.0 262 58.4
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 2.3e-76 289.7 263 59.3
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 3.0e-76 289.3 253 60.1
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 5.1e-76 288.5 255 60.0
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 1.1e-75 287.3 265 56.6
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 1.9e-75 286.6 254 60.6
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 4.3e-75 285.4 254 57.5
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 9.6e-75 284.3 263 57.0
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 9.6e-75 284.3 268 58.6
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 1.6e-74 283.5 265 55.5
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 1.6e-74 283.5 260 56.9
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 3.6e-74 282.3 265 55.5
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 3.6e-74 282.3 254 59.8
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 3.6e-74 282.3 260 56.5
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 6.2e-74 281.6 260 55.4
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 6.2e-74 281.6 255 54.9
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 1.1e-73 280.8 260 56.2
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.8e-73 280.0 264 55.7
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 2.4e-73 279.6 266 55.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 2.4e-73 279.6 263 56.7
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 3.1e-73 279.3 260 56.5
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 4.0e-73 278.9 259 54.4
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 4.0e-73 278.9 259 54.4
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 4.0e-73 278.9 259 54.4
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 5.3e-73 278.5 270 54.4
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 5.3e-73 278.5 267 55.4
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 5.3e-73 278.5 262 55.7
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 5.3e-73 278.5 264 54.9
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 9.0e-73 277.7 264 56.1
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 9.0e-73 277.7 265 53.6
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.2e-72 277.3 260 56.9
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.2e-72 277.3 264 54.5
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 2.6e-72 276.2 264 55.7
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 3.4e-72 275.8 259 54.8
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 5.8e-72 275.0 259 54.4
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 9.9e-72 274.2 257 56.0
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 9.9e-72 274.2 256 57.0
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 2.9e-71 272.7 223 64.1
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 4.9e-71 271.9 255 57.3
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 4.9e-71 271.9 257 56.4
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 6.4e-71 271.6 270 53.7
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 6.4e-71 271.6 254 56.3
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 3.2e-70 269.2 260 56.2
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 9.3e-70 267.7 256 55.5
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.2e-69 267.3 267 55.1
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 4.6e-69 265.4 267 54.3
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.0e-68 264.2 256 53.9
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 5.1e-68 261.9 256 53.1
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 8.7e-68 261.2 211 62.1
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 3.3e-67 259.2 264 55.3
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 2.1e-66 256.5 259 52.9
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 4.0e-65 252.3 229 59.0
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 3.4e-64 249.2 225 59.6
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 4.9e-63 245.4 224 55.4
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 2.4e-62 243.0 312 45.2
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 7.1e-62 241.5 223 55.2
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 9.6e-59 231.1 268 48.5
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.6e-58 230.3 251 49.0
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 9.0e-57 224.6 234 50.0
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 5.8e-56 221.9 266 47.4
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 4.2e-54 215.7 252 50.0
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 4.6e-53 212.2 190 55.3
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 6.7e-52 208.4 252 47.6
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 2.5e-51 206.5 162 64.8
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 1.4e-49 200.7 259 45.6
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.2e-46 189.5 153 60.1
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 2.7e-45 186.4 168 56.5
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 3.7e-42 176.0 254 42.5
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 2.2e-39 166.8 188 49.5
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 8.5e-39 164.9 160 53.1
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 1.4e-38 164.1 266 38.0
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 2.5e-38 163.3 155 54.2
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 2.5e-38 163.3 155 54.2
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 2.5e-38 163.3 155 54.2
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 1.2e-37 161.0 158 51.3
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 2.2e-34 150.2 280 34.6
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 5.3e-33 145.6 147 53.1
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 7.7e-32 141.7 116 59.5
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 1.9e-30 137.1 205 42.0
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 2.7e-29 133.3 111 60.4
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 2.3e-28 130.2 124 53.2
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 3.3e-27 126.3 179 43.6
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 3.1e-25 119.8 161 47.8
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 4.5e-24 115.9 97 60.8
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 1.2e-21 107.8 97 57.7
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 8.0e-21 105.1 84 58.3
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 3.7e-18 96.3 81 63.0
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 1.1e-17 94.7 79 67.1
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 5.3e-17 92.4 83 62.7
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 9.1e-17 91.7 164 38.4
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 1.2e-16 91.3 94 47.9
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 5.0e-15 85.9 163 35.6
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.3e-10 71.2 67 52.2
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 1.7e-10 70.9 94 43.6
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 1.4e-09 67.8 48 64.6
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 6.5e-07 58.9 85 49.4
MCO08G343 Micromonas commoda HOM05D005673 ORTHO05D267877 6.5e-07 58.9 253 26.9


User provided reference genes

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