Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.6e-94 349.4 170 100.0
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 5.3e-82 307.8 170 87.6
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 9.1e-74 280.4 166 81.9
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.0e-69 266.9 162 79.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.8e-69 266.2 166 77.1
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.8e-69 266.2 162 77.8
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 8.8e-69 263.8 162 75.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 5.7e-68 261.2 166 75.3
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 7.5e-68 260.8 170 72.9
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 7.5e-68 260.8 166 74.1
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.3e-67 260.0 162 77.2
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 6.3e-67 257.7 163 76.1
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.1e-66 256.9 169 72.8
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.8e-66 256.1 166 74.1
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 2.4e-66 255.8 161 75.8
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.1e-66 255.4 166 74.1
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 5.4e-66 254.6 154 81.2
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.2e-65 253.4 166 74.1
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 3.5e-65 251.9 169 70.4
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 4.5e-65 251.5 162 75.9
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-65 251.1 166 72.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-65 251.1 166 72.9
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.3e-64 250.0 166 72.3
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.2e-64 249.2 170 71.2
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 6.5e-64 247.7 163 72.4
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 6.5e-64 247.7 167 71.9
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.1e-63 246.9 201 62.2
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.5e-63 246.5 163 72.4
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.5e-63 244.6 163 71.8
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.5e-63 244.6 163 71.8
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.7e-62 242.3 167 69.5
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 8.0e-62 240.7 166 71.7
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.8e-61 239.6 154 76.0
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.8e-61 239.6 154 76.0
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.0e-61 238.4 163 67.5
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.0e-61 238.4 163 67.5
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 5.2e-61 238.0 182 66.5
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 6.8e-61 237.7 150 75.3
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 8.8e-61 237.3 168 64.9
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 2.6e-60 235.7 163 68.1
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 4.4e-60 235.0 167 68.3
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 4.4e-60 235.0 164 71.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 7.5e-60 234.2 165 68.5
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 2.8e-59 232.3 167 68.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 6.3e-59 231.1 162 66.7
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.1e-58 230.3 164 67.7
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.4e-58 229.2 154 72.1
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 7.0e-58 227.6 169 64.5
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.0e-56 223.8 163 64.4
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.7e-56 223.0 163 64.4
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.3e-56 222.6 164 64.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 2.9e-56 222.2 166 63.3
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 2.9e-56 222.2 163 63.8
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 2.9e-56 222.2 164 65.9
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 8.6e-56 220.7 166 65.1
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 8.6e-56 220.7 163 63.2
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.1e-55 220.3 167 64.1
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 9.5e-55 217.2 154 68.2
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-54 216.9 163 64.4
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.1e-54 216.1 162 67.9
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.4e-53 213.4 170 61.8
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.3e-53 212.6 163 63.8
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.2e-52 210.3 178 57.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.6e-52 209.1 167 63.5
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 3.4e-52 208.8 162 61.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 3.4e-52 208.8 166 62.7
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 5.7e-52 208.0 163 60.1
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 9.8e-52 207.2 127 77.2
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.7e-51 206.5 162 62.3
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.7e-51 206.5 162 62.3
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.7e-51 206.5 162 62.3
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.2e-51 206.1 167 59.9
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 2.9e-51 205.7 162 62.3
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 2.9e-51 205.7 162 62.3
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 8.3e-51 204.1 162 61.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 8.3e-51 204.1 164 62.2
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.4e-50 203.4 162 60.5
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.4e-50 203.4 162 62.3
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 4.1e-50 201.8 162 59.9
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 7.0e-50 201.1 169 55.6
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 7.0e-50 201.1 163 60.7
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 7.0e-50 201.1 163 60.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 9.2e-50 200.7 162 61.1
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.2e-49 200.3 168 57.7
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 7.8e-49 197.6 163 60.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 7.8e-49 197.6 168 60.7
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 7.8e-49 197.6 168 60.7
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 7.8e-49 197.6 168 60.7
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 7.8e-49 197.6 162 61.1
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 5.0e-48 194.9 124 74.2
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 5.0e-48 194.9 164 57.3
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 4.3e-47 191.8 168 57.7
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.1e-46 189.5 152 64.5
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 3.1e-45 185.7 162 58.0
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 8.9e-45 184.1 165 56.4
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 6.4e-43 177.9 164 55.5
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.9e-39 166.4 113 67.3
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 3.3e-39 165.6 167 52.1
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 2.1e-38 162.9 183 48.1
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-38 162.2 165 50.9
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.1e-37 160.6 183 48.1
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.3e-37 159.5 161 49.7
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-34 147.9 178 43.3
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-31 139.4 180 45.0
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-29 133.7 180 45.0
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-29 132.1 177 40.7
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-29 131.7 184 40.8
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-28 127.9 179 45.3
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.7e-27 126.7 101 57.4
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 8.4e-27 124.4 183 37.7
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-26 122.9 185 41.6
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-25 119.4 165 43.6
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 2.7e-25 119.4 112 54.5
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-25 119.0 171 41.5
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 6.0e-25 118.2 114 50.0
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-24 116.3 165 39.4
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 2.5e-23 112.8 137 40.1
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 5.6e-23 111.7 117 49.6
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.6e-22 110.2 68 72.1
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.1e-21 107.5 142 38.7
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.2e-20 104.0 70 71.4
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 3.4e-20 102.4 164 36.6
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-20 102.1 140 40.0
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 8.4e-19 97.8 169 36.7
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.4e-18 97.1 139 37.4
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-18 94.7 168 33.3
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 9.3e-18 94.4 173 35.8
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-17 94.0 136 39.0
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.1e-17 93.2 164 31.7
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.1e-17 93.2 153 32.7
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 2.1e-17 93.2 71 64.8
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-17 92.4 168 33.3
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 1.0e-16 90.9 71 69.0
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-15 86.7 174 31.0
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-15 85.9 147 36.7
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-15 85.5 173 31.2
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.3e-14 84.0 109 43.1
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-14 83.6 114 43.9
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-14 82.8 181 32.0
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-14 82.0 166 30.1
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-14 81.3 173 32.4
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-13 79.0 147 34.0
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-12 77.4 176 27.8
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-12 77.0 126 35.7
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-11 73.6 131 33.6
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-11 72.4 132 32.6
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 3.2e-10 69.3 42 78.6
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-09 65.9 158 26.6
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 6.0e-09 65.1 182 29.7
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 7.9e-09 64.7 188 26.6
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 7.9e-09 64.7 103 36.9
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-08 63.5 126 29.4
Dinv01344 Davidia involucrata HOM05D065005 ORTHO05D005623 1.6e-06 57.0 31 77.4
Ah.12g060480 Amaranthus hybridus HOM05D002606 ORTHO05D015240 6.2e-06 55.1 31 74.2


User provided reference genes

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