Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.4e-50 201.8 99 100.0
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.4e-50 201.8 99 100.0
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 7.0e-50 200.3 99 99.0
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.5e-44 182.6 99 91.9
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 4.7e-38 161.0 94 84.0
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.8e-37 156.8 94 80.9
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 8.8e-37 156.8 94 80.9
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 2.6e-36 155.2 93 81.7
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 4.4e-36 154.5 97 76.3
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 5.7e-36 154.1 95 80.0
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 7.5e-36 153.7 95 77.9
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.7e-35 152.5 94 78.7
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.8e-35 151.8 94 78.7
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 3.7e-35 151.4 94 77.7
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 3.7e-35 151.4 99 73.7
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 4.9e-35 151.0 94 78.7
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.4e-34 149.4 93 80.6
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 1.8e-34 149.1 95 76.8
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 5.4e-34 147.5 96 75.0
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.2e-33 146.4 96 74.0
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.0e-33 145.6 94 77.7
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.5e-33 144.8 99 70.7
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 4.5e-33 144.4 93 75.3
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.0e-32 143.3 94 72.3
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.7e-32 142.5 93 74.2
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.7e-32 142.5 97 70.1
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 2.3e-32 142.1 97 71.1
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 2.9e-32 141.7 97 71.1
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 72.3
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 75.5
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 3.8e-32 141.4 93 73.1
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-32 141.0 98 70.4
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-32 141.0 98 70.4
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-32 141.0 98 70.4
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 6.6e-32 140.6 96 72.9
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 8.6e-32 140.2 94 72.3
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.1e-31 139.8 96 70.8
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.1e-31 139.8 99 69.7
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 1.1e-31 139.8 93 73.1
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.5e-31 139.4 95 70.5
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.5e-31 139.4 95 70.5
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.5e-31 139.4 95 70.5
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.5e-31 139.4 97 70.1
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.9e-31 139.0 94 71.3
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.9e-31 139.0 94 71.3
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.5e-31 138.7 93 73.1
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 3.3e-31 138.3 97 69.1
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 4.3e-31 137.9 96 70.8
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 7.3e-31 137.1 97 69.1
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 7.3e-31 137.1 98 68.4
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 9.5e-31 136.7 93 69.9
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.6e-30 136.0 95 71.6
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 2.8e-30 135.2 92 71.7
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.8e-30 135.2 96 69.8
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 4.7e-30 134.4 97 68.0
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 4.7e-30 134.4 97 68.0
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 6.1e-30 134.0 98 68.4
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 1.0e-29 133.3 97 67.0
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.0e-29 133.3 101 69.3
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.4e-29 132.9 97 69.1
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.3e-29 132.1 99 68.7
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 2.3e-29 132.1 92 70.7
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 5.2e-29 131.0 100 65.0
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 8.9e-29 130.2 92 69.6
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 8.9e-29 130.2 92 69.6
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 8.9e-29 130.2 99 66.7
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.2e-28 129.8 99 65.7
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.5e-28 129.4 135 53.3
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 66.7
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 5.7e-28 127.5 72 84.7
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.3e-27 126.3 99 62.6
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.9e-27 125.2 69 85.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 6.4e-27 124.0 98 63.3
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 1.4e-26 122.9 144 47.9
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.8e-26 122.5 90 67.8
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 5.4e-26 120.9 96 61.5
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 2.7e-25 118.6 93 61.3
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 4.6e-25 117.9 89 65.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 5.9e-25 117.5 100 62.0
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 7.8e-25 117.1 104 60.6
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 7.8e-25 117.1 91 63.7
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.7e-24 115.9 92 58.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.6e-24 114.0 98 61.2
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 1.1e-23 113.2 100 61.0
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.5e-23 112.8 82 68.3
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 8.0e-22 107.1 95 58.9
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 4.0e-21 104.8 92 64.1
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.5e-20 102.8 167 40.7
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.3e-19 99.8 94 58.5
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.7e-19 98.2 49 91.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 8.3e-19 97.1 50 86.0
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.1e-18 96.7 94 60.6
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.2e-18 95.1 54 79.6
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 4.1e-18 94.7 64 73.4
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 4.1e-18 94.7 91 57.1
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.2e-17 93.2 66 66.7
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 2.0e-17 92.4 69 66.7
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 6.0e-17 90.9 65 70.8
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.3e-16 89.7 69 65.2
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 1.7e-16 89.4 78 56.4
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 1.2e-14 83.2 69 62.3
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 8.1e-14 80.5 51 66.7
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 3.3e-07 58.5 47 59.6
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 9.5e-07 57.0 59 55.9
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 1.6e-06 56.2 28 89.3


User provided reference genes

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