Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 2.4e-303 1044.6 522 100.0
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 1.6e-265 919.1 583 81.8
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.1e-255 886.3 524 87.0
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 8.3e-251 870.2 534 82.8
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 2.3e-176 622.9 555 60.7
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 2.6e-172 609.4 518 61.4
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 5.9e-172 608.2 550 58.0
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 2.9e-171 605.9 544 59.2
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 3.2e-170 602.4 570 57.9
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.2e-169 600.5 544 58.6
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 2.1e-169 599.7 544 58.6
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 2.5e-167 592.8 569 56.1
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 9.7e-167 590.9 538 58.4
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 1.8e-165 586.6 561 56.7
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 1.2e-164 583.9 540 58.3
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 1.3e-163 580.5 508 60.2
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 1.2e-161 573.9 538 58.0
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 6.7e-160 568.2 530 56.6
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 2.0e-159 566.6 537 56.1
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 2.6e-159 566.2 516 58.5
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 2.6e-159 566.2 505 59.2
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 4.4e-159 565.5 558 54.5
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 5.7e-159 565.1 521 56.8
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 1.3e-158 563.9 499 58.5
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 2.2e-158 563.1 529 57.1
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 2.2e-158 563.1 518 56.8
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 1.8e-157 560.1 531 55.4
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 5.3e-157 558.5 457 63.0
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 3.5e-156 555.8 535 55.1
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 7.7e-156 554.7 497 59.4
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 1.0e-155 554.3 505 56.2
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 2.2e-155 553.1 531 56.7
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 8.5e-155 551.2 623 52.2
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 1.1e-154 550.8 628 51.9
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 1.4e-154 550.4 490 59.2
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.9e-154 550.1 555 53.2
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 1.9e-154 550.1 516 54.1
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 1.9e-154 550.1 487 60.6
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 3.2e-154 549.3 486 58.8
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 5.5e-154 548.5 496 57.7
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 2.1e-153 546.6 486 59.3
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 2.7e-153 546.2 520 56.0
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 6.1e-153 545.0 522 56.5
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 8.0e-153 544.7 524 56.5
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 8.8e-152 541.2 556 54.7
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 2.6e-151 539.7 519 54.5
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 1.7e-150 537.0 522 56.7
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 4.8e-150 535.4 510 55.5
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 6.3e-150 535.0 530 54.3
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 7.0e-149 531.6 522 55.0
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 1.6e-148 530.4 534 54.5
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 1.2e-145 520.8 422 62.1
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.6e-145 520.4 560 50.9
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 2.7e-145 519.6 531 53.1
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 3.6e-145 519.2 583 49.6
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 4.7e-145 518.8 486 57.4
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 6.1e-145 518.5 504 53.0
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 1.8e-144 516.9 484 56.6
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 4.0e-144 515.8 486 56.6
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 4.0e-144 515.8 484 55.0
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 5.2e-144 515.4 496 55.4
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 6.7e-144 515.0 484 56.2
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 6.7e-144 515.0 420 64.5
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 1.2e-143 514.2 484 56.2
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 1.5e-143 513.8 486 57.6
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 4.4e-143 512.3 435 61.1
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 7.5e-143 511.5 484 55.6
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 3.7e-142 509.2 486 56.0
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 3.1e-141 506.1 487 55.2
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 4.1e-141 505.8 484 55.2
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 7.0e-141 505.0 460 58.7
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 1.6e-140 503.8 518 54.8
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 2.0e-140 503.4 459 57.1
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 2.7e-140 503.1 485 55.9
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 4.5e-140 502.3 509 53.2
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 1.3e-139 500.7 486 54.7
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 1.7e-139 500.4 492 54.1
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 1.5e-138 497.3 483 55.5
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 2.5e-138 496.5 514 51.8
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 2.5e-138 496.5 450 59.3
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 3.2e-138 496.1 516 53.1
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 3.2e-138 496.1 516 53.1
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 8.3e-134 481.5 519 51.3
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 1.1e-133 481.1 520 50.4
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 2.4e-133 479.9 532 51.7
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 1.6e-132 477.2 448 55.8
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 7.7e-132 474.9 504 52.4
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.1e-130 471.1 462 56.7
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 2.1e-129 466.8 486 52.9
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 8.3e-126 454.9 548 47.1
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 2.0e-124 450.3 383 61.1
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 4.7e-121 439.1 520 47.9
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 8.9e-120 434.9 321 68.2
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 1.7e-118 430.6 367 58.9
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 2.2e-118 430.3 534 46.3
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 4.4e-111 406.0 253 73.9
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 1.5e-106 391.0 255 71.8
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 2.5e-106 390.2 541 41.2
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 6.2e-105 385.6 527 42.9
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 7.5e-103 378.6 533 40.7
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 1.3e-91 341.3 263 65.4
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 4.3e-90 336.3 225 70.7
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 2.4e-88 330.5 416 46.4
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 1.7e-83 314.3 256 56.2
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 6.6e-83 312.4 404 46.3
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 4.5e-79 299.7 231 62.8
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 1.3e-70 271.6 457 35.7
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 4.2e-69 266.5 246 57.7
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 3.3e-50 203.8 252 40.9
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 5.7e-50 203.0 489 29.7
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 5.3e-48 196.4 222 55.9
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 5.0e-46 189.9 176 54.0
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 3.3e-42 177.2 238 45.4
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 7.7e-39 166.0 210 44.8
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 6.5e-30 136.3 106 64.2
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 3.6e-28 130.6 182 43.4
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 5.7e-26 123.2 176 40.9
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 4.8e-25 120.2 224 40.2
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 3.1e-24 117.5 101 62.4
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 4.5e-23 113.6 104 55.8
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 1.3e-22 112.1 146 44.5
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 2.9e-22 110.9 105 61.9
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 1.9e-21 108.2 312 27.9
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 4.0e-19 100.5 223 35.4
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 1.4e-16 92.0 45 91.1
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.2e-15 89.0 132 40.2
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 1.0e-14 85.9 137 40.1
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.3e-14 84.7 111 46.8
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 1.9e-13 81.6 113 43.4
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 1.2e-12 79.0 45 75.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 8.9e-11 72.8 125 34.4
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 1.0e-06 59.3 45 57.8


User provided reference genes

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