Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 2484.5 1309 100.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 2388.2 1308 94.0
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 2225.3 1383 83.8
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 1986.5 1312 80.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1327.4 1342 58.4
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1291.2 1350 56.7
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1219.9 1361 55.1
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1180.2 1338 51.7
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1153.7 1248 53.8
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1145.2 1263 53.4
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1141.7 1288 51.4
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1120.1 1323 50.3
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1118.2 1350 50.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1114.4 1372 49.2
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1089.3 1344 51.8
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1075.8 1344 50.7
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1075.5 1367 49.2
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 2.7e-311 1072.4 1331 51.1
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 4.9e-308 1061.6 1346 50.3
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 4.5e-306 1055.0 1369 49.3
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 5.0e-305 1051.6 1370 48.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.1e-303 1046.2 1382 48.3
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.3e-302 1042.7 1347 48.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.7e-298 1029.2 1333 48.5
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 8.6e-297 1024.2 1344 50.2
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 3.3e-296 1022.3 1350 50.1
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 2.8e-295 1019.2 1289 48.9
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.6e-293 1012.7 1337 48.5
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.5e-288 996.9 1332 46.9
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 8.9e-286 987.6 1276 48.7
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 1.9e-283 979.9 1295 47.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.6e-282 976.9 1314 46.7
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.1e-281 971.8 1360 45.8
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 7.3e-280 968.0 1255 45.3
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.8e-278 963.4 1397 45.5
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.8e-278 961.4 1389 46.3
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.7e-276 956.8 1338 47.2
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.4e-275 953.7 1410 44.5
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.3e-272 942.2 1281 44.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 3.6e-271 939.1 1355 46.0
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.6e-266 923.7 1388 45.4
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 3.1e-262 909.4 1368 45.4
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 3.1e-262 909.4 1387 44.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 9.0e-262 907.9 1359 46.2
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 9.9e-261 904.4 1347 43.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 6.0e-258 895.2 1295 45.3
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 6.7e-257 891.7 1300 44.8
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.8e-255 886.3 1356 43.6
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 3.8e-252 875.9 1262 45.4
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 5.5e-251 872.1 1272 44.0
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 6.7e-249 865.1 1286 44.8
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 1.5e-245 854.0 1224 44.4
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.2e-244 850.1 1260 43.3
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.6e-242 842.4 1224 44.0
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.3e-239 834.3 1261 42.7
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 8.2e-231 805.1 1267 43.5
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 4.2e-227 792.7 1280 40.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.6e-226 789.6 1304 42.0
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.3e-223 781.2 1375 40.5
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.2e-223 780.4 1088 44.4
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.9e-211 740.7 943 47.0
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 6.8e-201 705.7 1282 38.7
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 8.3e-199 698.7 1272 36.6
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 7.0e-198 695.7 911 46.0
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.9e-196 690.3 1437 37.4
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 4.4e-192 676.4 1331 36.3
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.1e-190 671.8 1323 37.2
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.1e-190 671.8 792 51.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 5.4e-190 669.5 1330 37.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 8.0e-186 655.6 1258 38.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 5.4e-182 642.9 1319 36.3
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 5.0e-180 636.3 1327 37.5
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 6.6e-180 636.0 1291 37.8
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 8.6e-180 635.6 1327 36.9
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.6e-178 631.3 1323 36.8
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 8.0e-178 629.0 1244 38.4
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 4.0e-177 626.7 1318 36.8
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 2.6e-176 624.0 1277 36.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.3e-175 621.7 1320 35.4
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.7e-175 620.2 1301 37.0
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 3.7e-175 620.2 1308 40.1
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.9e-166 591.3 1242 35.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.8e-161 574.7 1206 35.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 4.0e-161 573.5 1320 33.6
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 6.9e-153 546.2 1232 35.1
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.4e-150 536.6 674 50.4
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.4e-145 521.9 1314 33.2
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.8e-145 521.5 762 43.8
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.8e-132 478.4 1436 30.6
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 6.5e-119 433.3 498 51.2
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 2.0e-112 411.8 991 34.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.5e-103 380.2 575 42.4
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 4.2e-102 377.5 1189 28.3
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.1e-97 361.3 766 36.7
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.2e-77 296.2 738 32.5
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.2e-77 296.2 1656 25.1
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.5e-75 289.3 305 50.5
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 4.4e-75 287.7 1491 26.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.8e-74 285.0 360 49.7
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.3e-66 259.6 293 54.3
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.5e-62 246.1 358 40.5
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.0e-59 235.7 1357 24.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 2.6e-59 235.3 164 67.1
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.9e-42 177.9 233 46.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.1e-41 176.8 105 76.2
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.9e-41 176.0 1302 23.3
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.3e-39 169.9 201 45.8
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.9e-33 149.4 216 40.3
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 1.0e-31 143.7 189 40.7
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.3e-31 142.5 150 47.3
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 1.7e-26 126.3 182 39.0
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 2.3e-23 115.9 102 53.9
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.4e-22 110.9 142 47.9
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 5.3e-20 104.8 85 56.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 5.3e-20 104.8 85 55.3
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 2.2e-18 99.4 164 36.6
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 1.2e-16 93.6 69 56.5
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.3e-15 90.1 194 36.6
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 8.7e-15 87.4 107 47.7
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 2.5e-14 85.9 116 71.6
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 3.3e-14 85.5 273 31.5
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 9.6e-14 84.0 96 46.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.8e-13 82.4 77 50.6
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.8e-13 82.4 77 50.6
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 3.7e-13 82.0 118 41.5
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.1e-12 80.5 165 30.3
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.1e-12 79.0 54 64.8
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.2e-10 72.8 146 30.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.9e-10 72.4 59 55.9
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 9.3e-09 67.4 51 56.9
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.1e-08 66.2 74 45.9
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 1.1e-06 60.5 54 51.9
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 3.3e-06 58.9 122 31.1
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 4.3e-06 58.5 45 64.4


User provided reference genes

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