Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 5.6e-133 477.6 244 100.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.8e-102 376.3 243 79.0
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.0e-90 336.3 179 94.4
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 1.4e-88 330.1 246 71.5
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 1.9e-27 127.1 185 44.3
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.2e-27 126.3 241 36.9
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 6.0e-26 122.1 235 39.1
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.9e-25 119.4 246 38.6
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 9.5e-24 114.8 244 37.7
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.1e-23 113.6 194 39.7
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.1e-23 113.6 205 38.0
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.8e-23 113.2 238 35.7
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 4.7e-23 112.5 246 35.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 8.0e-23 111.7 239 36.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 8.0e-23 111.7 237 37.1
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.4e-22 110.9 225 36.9
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.8e-22 110.5 203 38.4
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.3e-22 110.2 237 33.3
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 3.1e-22 109.8 236 36.0
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 3.1e-22 109.8 204 37.7
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 3.1e-22 109.8 199 40.7
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 4.0e-22 109.4 204 38.2
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.0e-22 109.4 206 39.3
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 5.2e-22 109.0 236 36.9
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 8.9e-22 108.2 204 37.3
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 1.2e-21 107.8 225 36.0
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 1.2e-21 107.8 203 37.9
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 1.2e-21 107.8 242 34.7
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.5e-21 107.5 209 38.8
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.6e-21 106.7 241 34.0
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 4.4e-21 105.9 215 40.0
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 1.3e-20 104.4 231 36.4
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.3e-20 104.4 229 35.8
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.2e-20 103.6 229 33.2
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.9e-20 103.2 232 35.8
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.9e-20 103.2 218 35.8
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 4.9e-20 102.4 204 38.2
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.1e-19 101.3 238 34.5
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 1.4e-19 100.9 203 34.5
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.9e-19 100.5 227 35.2
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.2e-19 99.8 197 34.5
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.4e-19 99.0 225 35.1
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 5.4e-19 99.0 241 34.0
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 7.0e-19 98.6 228 32.9
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.2e-18 97.8 239 33.9
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.2e-18 97.8 239 33.9
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.2e-18 97.8 208 33.7
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.6e-18 97.4 223 35.9
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 1.6e-18 97.4 194 35.1
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.0e-17 94.7 216 32.4
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 2.3e-17 93.6 187 36.4
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 5.1e-17 92.4 183 35.0
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.9e-16 90.5 204 30.4
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 2.5e-16 90.1 182 34.6
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 3.3e-16 89.7 207 33.3
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 3.3e-16 89.7 179 34.1
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 4.3e-16 89.4 209 33.5
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.3e-16 88.6 194 34.0
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 9.5e-16 88.2 249 30.9
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.2e-15 87.8 219 31.5
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.2e-15 87.8 196 33.7
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.6e-15 87.4 166 38.0
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.1e-15 87.0 185 35.7
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.8e-15 86.7 188 37.8
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.6e-15 86.3 185 37.3
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 3.6e-15 86.3 227 33.9
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 6.2e-15 85.5 203 30.5
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 6.2e-15 85.5 202 36.6
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 6.2e-15 85.5 188 34.6
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.1e-15 85.1 166 36.7
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 8.1e-15 85.1 180 31.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.1e-14 84.7 193 35.8
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 1.4e-14 84.3 200 34.5
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-14 84.0 185 35.1
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 1.8e-14 84.0 193 32.1
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 3.1e-14 83.2 208 32.7
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 4.0e-14 82.8 228 31.1
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 5.2e-14 82.4 199 36.2
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 5.2e-14 82.4 198 34.8
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 6.8e-14 82.0 201 34.8
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 6.8e-14 82.0 201 34.8
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 8.9e-14 81.6 229 31.4
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 8.9e-14 81.6 189 34.9
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 8.9e-14 81.6 271 27.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 8.9e-14 81.6 170 35.9
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 3.4e-13 79.7 183 31.7
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.4e-13 79.7 248 33.5
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 4.4e-13 79.3 195 29.7
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 5.8e-13 79.0 221 33.9
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.5e-13 78.6 246 31.3
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 9.9e-13 78.2 188 33.5
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 9.9e-13 78.2 188 33.5
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 9.9e-13 78.2 221 33.9
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 1.3e-12 77.8 171 35.1
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.3e-12 77.8 198 31.3
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.7e-12 77.4 234 31.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.7e-12 77.4 219 30.6
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.7e-12 77.4 219 30.6
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 6.4e-12 75.5 171 35.1
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 8.3e-12 75.1 189 33.3
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 1.1e-11 74.7 165 33.3
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 1.4e-11 74.3 174 33.3
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 2.4e-11 73.6 114 37.7
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 3.2e-11 73.2 171 33.9
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 5.4e-11 72.4 179 34.1
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 5.4e-11 72.4 202 32.2
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 5.4e-11 72.4 180 31.7
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 5.4e-11 72.4 224 29.5
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 9.2e-11 71.6 173 31.8
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.2e-10 71.2 246 32.1
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 1.2e-10 71.2 245 29.0
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 3.5e-10 69.7 191 30.9
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 6.0e-10 68.9 257 28.4
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 7.8e-10 68.6 209 28.2
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 7.8e-10 68.6 211 31.3
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.3e-09 67.8 200 29.0
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 5.1e-09 65.9 221 30.3
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 6.6e-09 65.5 185 30.8
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 6.6e-09 65.5 157 38.9
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.1e-08 64.7 173 34.7
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 1.1e-08 64.7 206 29.6
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 1.1e-08 64.7 177 31.6
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 1.1e-08 64.7 209 27.3
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 3.3e-08 63.2 122 32.0
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.6e-08 62.4 181 31.5
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.3e-08 62.0 183 32.8
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 9.5e-08 61.6 178 30.9
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 1.6e-07 60.8 175 31.4
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 1.6e-07 60.8 211 30.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.8e-07 60.1 214 29.0
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 2.8e-07 60.1 186 31.7
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.7e-07 59.3 106 34.0
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 4.7e-07 59.3 93 39.8
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 6.2e-07 58.9 198 31.3
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 6.2e-07 58.9 198 31.3
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.2e-07 58.9 249 28.9
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.2e-07 58.9 202 32.7
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 8.1e-07 58.5 186 31.2
SEGI_08793 Sequoiadendron giganteum HOM05D019663 ORTHO05D003195 8.1e-07 58.5 124 34.7
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 8.1e-07 58.5 110 33.6
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.4e-06 57.8 153 32.0
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.4e-06 57.8 121 36.4
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 1.8e-06 57.4 104 33.7
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 3.1e-06 56.6 249 26.9
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 3.1e-06 56.6 180 30.0
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 5.2e-06 55.8 229 25.3
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 5.2e-06 55.8 186 31.2
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 6.8e-06 55.5 207 27.1
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 6.8e-06 55.5 166 28.9


User provided reference genes

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