Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.3e-64 249.6 127 100.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 6.8e-58 227.3 133 88.7
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 3.4e-57 224.9 127 87.4
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 7.8e-54 213.8 127 83.5
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.5e-52 209.5 124 79.0
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.5e-52 209.5 124 79.0
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.2e-51 206.5 127 77.2
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 4.7e-51 204.5 127 74.8
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 4.7e-51 204.5 119 80.7
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 1.1e-50 203.4 127 76.4
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 123 78.9
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 1.8e-50 202.6 121 76.9
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 3.1e-50 201.8 127 75.6
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 3.1e-50 201.8 127 75.6
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 4.0e-50 201.4 127 71.7
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 5.2e-50 201.1 127 74.8
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 5.2e-50 201.1 127 74.0
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 6.9e-50 200.7 123 74.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.0e-49 199.1 123 77.2
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 2.0e-49 199.1 123 74.0
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 2.0e-49 199.1 127 74.8
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 2.6e-49 198.7 127 75.6
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 2.6e-49 198.7 123 75.6
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 2.6e-49 198.7 127 74.0
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.8e-49 197.6 123 76.4
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.8e-49 197.6 123 76.4
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 5.8e-49 197.6 127 75.6
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 7.6e-49 197.2 123 77.2
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 7.6e-49 197.2 127 71.7
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 9.9e-49 196.8 127 72.4
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.7e-48 196.1 122 76.2
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.7e-48 196.1 124 75.8
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 2.2e-48 195.7 124 73.4
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 2.9e-48 195.3 123 72.4
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 2.9e-48 195.3 123 75.6
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 3.8e-48 194.9 124 71.0
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 3.8e-48 194.9 124 73.4
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.9e-48 194.5 123 75.6
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.4e-48 194.1 122 75.4
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 6.4e-48 194.1 123 73.2
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 6.4e-48 194.1 124 72.6
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 74.0
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 2.4e-47 192.2 127 71.7
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.4e-47 192.2 121 72.7
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 3.2e-47 191.8 123 70.7
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 3.2e-47 191.8 123 70.7
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 5.4e-47 191.0 123 70.7
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 5.4e-47 191.0 123 70.7
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 5.4e-47 191.0 123 70.7
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 5.4e-47 191.0 123 70.7
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 5.4e-47 191.0 123 70.7
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 5.4e-47 191.0 124 71.0
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 7.1e-47 190.7 123 69.9
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 7.1e-47 190.7 123 70.7
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 9.3e-47 190.3 123 70.7
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 9.3e-47 190.3 123 72.4
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-46 189.9 123 69.9
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.2e-46 189.9 123 72.4
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.6e-46 189.5 123 71.5
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 1.6e-46 189.5 123 72.4
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 2.1e-46 189.1 124 71.0
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 2.1e-46 189.1 124 73.4
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 2.1e-46 189.1 123 69.1
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.1e-46 189.1 124 71.0
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.1e-46 189.1 123 71.5
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 2.1e-46 189.1 123 73.2
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 2.7e-46 188.7 157 61.1
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.7e-46 188.7 124 72.6
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 2.7e-46 188.7 123 71.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 4.6e-46 188.0 123 70.7
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 4.6e-46 188.0 123 69.9
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.0e-46 187.6 120 72.5
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.0e-46 187.6 121 72.7
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.8e-46 187.2 121 71.9
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 7.8e-46 187.2 121 71.9
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 1.0e-45 186.8 124 70.2
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.0e-45 186.8 123 72.4
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.3e-45 186.4 124 71.0
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.3e-45 186.4 124 71.0
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.7e-45 186.0 123 70.7
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.3e-45 185.7 121 70.2
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 3.9e-45 184.9 122 72.1
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 3.9e-45 184.9 128 71.9
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 3.9e-45 184.9 124 69.4
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 3.9e-45 184.9 122 69.7
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.1e-45 184.5 121 74.4
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.1e-44 183.3 121 70.2
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.1e-44 183.3 123 66.7
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.5e-44 183.0 123 69.9
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 2.5e-44 182.2 110 76.4
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 2.5e-44 182.2 127 67.7
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 3.3e-44 181.8 121 71.1
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 4.3e-44 181.4 119 73.1
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 5.6e-44 181.0 123 70.7
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.3e-43 179.9 123 70.7
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.6e-43 179.5 127 67.7
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.6e-43 179.5 123 68.3
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.6e-43 179.5 124 69.4
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.1e-43 179.1 123 68.3
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.1e-43 179.1 121 67.8
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.8e-43 178.7 127 66.1
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 6.2e-43 177.6 121 67.8
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.1e-43 177.2 109 74.3
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.1e-42 176.8 122 67.2
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.4e-42 176.4 123 68.3
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.1e-42 175.3 124 66.1
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 4.0e-42 174.9 123 67.5
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 4.5e-41 171.4 124 66.9
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.8e-41 171.0 121 68.6
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 9.9e-41 170.2 124 66.9
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 1.7e-40 169.5 119 68.1
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 2.9e-40 168.7 119 67.2
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 6.4e-40 167.5 123 64.2
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 3.2e-39 165.2 123 65.9
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 3.2e-39 165.2 123 67.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.2e-38 163.3 127 63.8
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 4.6e-38 161.4 121 62.8
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 4.6e-38 161.4 124 63.7
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.3e-37 159.1 123 62.6
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 3.0e-37 158.7 124 62.1
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 7.4e-36 154.1 127 62.2
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 7.4e-36 154.1 127 62.2
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.8e-35 152.1 121 64.5
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 8.1e-35 150.6 104 66.3
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 1.5e-33 146.4 107 64.5
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 3.4e-33 145.2 110 61.8
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 4.2e-31 138.3 120 53.3
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.1e-30 136.0 83 75.9
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 7.9e-30 134.0 96 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 8.2e-27 124.0 119 51.3
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.5e-25 119.8 127 52.8
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 7.6e-25 117.5 94 61.7
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 1.3e-24 116.7 127 51.2
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 2.9e-24 115.5 83 67.5
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.5e-23 112.5 124 51.6
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 3.2e-23 112.1 118 53.4
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 2.1e-22 109.4 62 77.4
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 7.9e-22 107.5 100 55.0
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 1.0e-21 107.1 82 63.4
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.0e-21 105.5 63 73.0
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.5e-20 102.4 85 61.2
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.4e-20 100.9 94 54.3
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 9.7e-20 100.5 69 65.2
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 8.5e-16 87.4 85 57.6
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.5e-12 75.9 104 43.3
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 1.4e-10 70.1 62 51.6
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.4e-10 69.3 37 83.8
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 4.1e-10 68.6 111 37.8
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 1.3e-08 63.5 43 62.8
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 1.7e-08 63.2 111 36.0
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 2.2e-08 62.8 107 33.6


User provided reference genes

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