Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G028570 Cucumis sativus L. HOM05D002539 ORTHO05D174379 7.0e-153 543.9 270 100.0
ClCG06G009680 Citrullus lanatus HOM05D002539 ORTHO05D002876 1.3e-29 134.4 284 36.6
ClCG11G015510 Citrullus lanatus HOM05D002539 ORTHO05D002876 8.3e-29 131.7 284 37.0
MELO3C010154.2 Cucumis melo HOM05D002539 ORTHO05D002876 2.5e-25 120.2 284 35.2
CsaV3_1G045270 Cucumis sativus L. HOM05D002539 ORTHO05D002876 2.8e-24 116.7 242 37.6
Sed0022259 Sechium edule HOM05D002539 ORTHO05D002876 8.1e-24 115.2 241 38.2
CiPaw.08G089900 Carya illinoinensis HOM05D002539 ORTHO05D002876 4.4e-22 109.4 293 33.1
Cfa005804 Carpinus fangiana HOM05D002539 ORTHO05D002876 7.1e-20 102.1 251 35.1
Haze_05036 Corylus avellana HOM05D002539 ORTHO05D002876 1.2e-19 101.3 242 34.7
Ca_12846_v3 Cicer arietinum L. HOM05D002539 ORTHO05D002876 1.5e-17 94.4 289 30.8
CANSAT78G0122 Cannabis sativa HOM05D002539 ORTHO05D002876 2.5e-17 93.6 242 33.9
Psat1g054320 Pisum sativum HOM05D002539 ORTHO05D002876 3.3e-17 93.2 296 29.7
Glyma.06G315500 Glycine max HOM05D002539 ORTHO05D002876 5.6e-17 92.4 296 31.8
Glyma.06G316500 Glycine max HOM05D002539 ORTHO05D002876 5.6e-17 92.4 287 32.1
Lj3g0026518 Lotus japonicus HOM05D002539 ORTHO05D002876 5.6e-17 92.4 234 34.6
Sabra14G0089800 Salix brachista HOM05D002539 ORTHO05D002876 5.6e-17 92.4 278 29.9
Manes.01G227400 Manihot esculenta HOM05D002539 ORTHO05D002876 7.3e-17 92.0 283 30.7
TWI36G0273 Tripterygium wilfordii HOM05D002539 ORTHO05D002876 7.3e-17 92.0 283 29.7
Medtr3g007750 Medicago truncatula HOM05D002539 ORTHO05D002876 2.1e-16 90.5 280 31.1
FAN04G1895 Fragaria x ananassa HOM05D002539 ORTHO05D002876 3.6e-16 89.7 232 35.3
Lalb_Chr19g0133121 Lupinus albus HOM05D002539 ORTHO05D002876 4.7e-16 89.4 281 30.2
arahy.Tifrunner.gnm1.ann1.VKDS2Z Arachis hypogaea HOM05D002539 ORTHO05D002876 1.1e-15 88.2 277 31.0
Duzib133G1023 Durio zibethinus HOM05D002539 ORTHO05D002876 1.8e-15 87.4 278 30.6
Phvul.003G030300 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 1.8e-15 87.4 294 31.6
VMungo0647G1023 Vigna mungo HOM05D002539 ORTHO05D002876 3.1e-15 86.7 293 31.1
arahy.Tifrunner.gnm1.ann1.E77Y9X Arachis hypogaea HOM05D002539 ORTHO05D002876 4.0e-15 86.3 277 30.7
Cpa.g.sc26.213 Carica papaya HOM05D002539 ORTHO05D002876 4.0e-15 86.3 283 29.3
VMungo1080G1512 Vigna mungo HOM05D002539 ORTHO05D002876 8.9e-15 85.1 282 30.5
TPR.G28828 Trifolium pratense HOM05D002539 ORTHO05D002876 1.2e-14 84.7 90 53.3
TWI18G1220 Tripterygium wilfordii HOM05D002539 ORTHO05D002876 1.5e-14 84.3 283 28.3
Thecc.01G312800 Theobroma cacao HOM05D002539 ORTHO05D002876 2.0e-14 84.0 254 30.3
THA.LOC104802156 Tarenaya hassleriana HOM05D002539 ORTHO05D002876 2.6e-14 83.6 258 29.8
COL.COLO4_23237 Corchorus olitorius HOM05D002539 ORTHO05D002876 3.4e-14 83.2 258 30.2
Potri.014G121200 Populus trichocarpa HOM05D002539 ORTHO05D002876 3.4e-14 83.2 281 27.8
Atru.chr5.1006 Acer truncatum HOM05D002539 ORTHO05D002876 5.8e-14 82.4 243 32.5
Prupe.8G271700 Prunus persica HOM05D002539 ORTHO05D002876 5.8e-14 82.4 255 31.8
GSVIVG01028116001 Vitis vinifera HOM05D002539 ORTHO05D002876 5.8e-14 82.4 238 31.1
Gohir.D07G132600 Gossypium hirsutum HOM05D002539 ORTHO05D002876 7.6e-14 82.0 267 30.0
Phvul.008G161800 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 7.6e-14 82.0 294 31.3
Prupe.1G563800 Prunus persica HOM05D002539 ORTHO05D002876 1.3e-13 81.3 248 31.9
Gorai.001G144000 Gossypium raimondii HOM05D002539 ORTHO05D002876 2.2e-13 80.5 291 29.2
RcHm_v2.0_Chr7g0241601 Rosa chinensis HOM05D002539 ORTHO05D002876 2.2e-13 80.5 284 29.6
Ciclev10020794m.g Citrus clementina HOM05D002539 ORTHO05D002876 2.9e-13 80.1 241 31.1
BraA03t11813Z Brassica rapa HOM05D002539 ORTHO05D002876 3.7e-13 79.7 293 28.3
MD11G1314900 Malus domestica HOM05D002539 ORTHO05D002876 3.7e-13 79.7 244 32.0
TPR.G13883 Trifolium pratense HOM05D002539 ORTHO05D002876 3.7e-13 79.7 84 51.2
PSO017G2058 Papaver somniferum HOM05D002539 ORTHO05D002876 4.9e-13 79.3 301 27.2
PSO017G3927 Papaver somniferum HOM05D002539 ORTHO05D002876 4.9e-13 79.3 301 27.2
Aa31LG1G28720 Aethionema arabicum HOM05D002539 ORTHO05D002876 6.4e-13 79.0 252 29.0
PSO478G5203 Papaver somniferum HOM05D002539 ORTHO05D002876 6.4e-13 79.0 298 27.5
BcaB01g03167 Brassica carinata HOM05D002539 ORTHO05D002876 8.4e-13 78.6 274 28.5
Actinidia12778 Actinidia chinensis HOM05D002539 ORTHO05D002876 1.1e-12 78.2 299 27.1
FAN13G0855 Fragaria x ananassa HOM05D002539 ORTHO05D002876 1.1e-12 78.2 245 31.4
AL4G46980 Arabidopsis lyrata HOM05D002539 ORTHO05D002876 1.9e-12 77.4 261 28.4
A03p25960 Brassica napus HOM05D002539 ORTHO05D002876 1.9e-12 77.4 278 28.4
FvH4_5g39320 Fragaria vesca HOM05D002539 ORTHO05D002876 1.9e-12 77.4 245 31.4
FAN08G2541 Fragaria x ananassa HOM05D002539 ORTHO05D002876 1.9e-12 77.4 245 31.4
FAN18G4394 Fragaria x ananassa HOM05D002539 ORTHO05D002876 1.9e-12 77.4 245 31.4
PSO210G3830 Papaver somniferum HOM05D002539 ORTHO05D002876 2.4e-12 77.0 301 26.6
Nn4g25605 Nelumbo nucifera HOM05D002539 ORTHO05D002876 4.1e-12 76.3 297 26.9
Rhsim05G0132200 Rhododendron simsii HOM05D002539 ORTHO05D002876 4.1e-12 76.3 269 28.6
Thhalv10001522m.g Eutrema salsugineum HOM05D002539 ORTHO05D002876 5.4e-12 75.9 252 28.6
AT2G47420 Arabidopsis thaliana HOM05D002539 ORTHO05D002876 7.1e-12 75.5 252 28.2
Gohir.A07G128300 Gossypium hirsutum HOM05D002539 ORTHO05D002876 9.2e-12 75.1 253 30.4
vmacro19791 Vaccinium macrocarpon HOM05D002539 ORTHO05D002876 9.2e-12 75.1 269 27.9
Aqoxy3G02771 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 1.6e-11 74.3 251 29.9
CARHR142810 Cardamine hirsuta HOM05D002539 ORTHO05D002876 1.6e-11 74.3 252 27.8
BcaC01g05030 Brassica carinata HOM05D002539 ORTHO05D002876 2.1e-11 73.9 278 28.1
C03p30960 Brassica napus HOM05D002539 ORTHO05D002876 2.1e-11 73.9 278 28.1
BolC3t15447H Brassica oleracea HOM05D002539 ORTHO05D002876 2.1e-11 73.9 278 28.1
Hma1.2p1_0008F-1.1_g005650 Hydrangea macrophylla HOM05D002539 ORTHO05D002876 2.1e-11 73.9 275 27.3
BcaB02g08773 Brassica carinata HOM05D002539 ORTHO05D002876 2.7e-11 73.6 249 27.7
Actinidia01512 Actinidia chinensis HOM05D002539 ORTHO05D002876 3.5e-11 73.2 90 46.7
MSTRG.27944 Avicennia marina HOM05D002539 ORTHO05D002876 3.5e-11 73.2 296 27.4
CSS0002968 Camellia sinensis var. sinensis HOM05D002539 ORTHO05D002876 3.5e-11 73.2 275 26.9
A05p00500 Brassica napus HOM05D002539 ORTHO05D002876 4.6e-11 72.8 275 27.6
Sp4g29370 Schrenkiella parvula HOM05D002539 ORTHO05D002876 4.6e-11 72.8 287 27.2
Carub.0004s3014 Capsella rubella HOM05D002539 ORTHO05D002876 6.0e-11 72.4 252 27.8
CAN.G1715.3 Capsicum annuum HOM05D002539 ORTHO05D002876 6.0e-11 72.4 299 28.1
Dinv24437 Davidia involucrata HOM05D002539 ORTHO05D002876 6.0e-11 72.4 244 28.3
Oeu037028.1 Olea europaea HOM05D002539 ORTHO05D002876 6.0e-11 72.4 278 28.1
Cc02_g34970 Coffea canephora HOM05D002539 ORTHO05D002876 7.8e-11 72.0 286 28.7
CDE08G0890 Ceratophyllum demersum HOM05D002539 ORTHO05D002876 1.0e-10 71.6 186 31.7
Dinv24436 Davidia involucrata HOM05D002539 ORTHO05D002876 1.0e-10 71.6 269 27.5
BcaC02g12577 Brassica carinata HOM05D002539 ORTHO05D002876 1.3e-10 71.2 275 27.6
C04p00450 Brassica napus HOM05D002539 ORTHO05D002876 1.3e-10 71.2 275 27.6
BraA05t19048Z Brassica rapa HOM05D002539 ORTHO05D002876 2.3e-10 70.5 275 27.3
SGA_v2.0_scaffold37G14612 Striga asiatica HOM05D002539 ORTHO05D002876 2.3e-10 70.5 272 28.7
Nitab4.5_0000368g0120 Nicotiana tabacum HOM05D002539 ORTHO05D002876 3.9e-10 69.7 268 28.0
Nitab4.5_0004873g0050 Nicotiana tabacum HOM05D002539 ORTHO05D002876 3.9e-10 69.7 268 28.0
Migut.C00729 Erythranthe guttata HOM05D002539 ORTHO05D002876 5.1e-10 69.3 268 27.2
SGA_v2.0_scaffold5G02884 Striga asiatica HOM05D002539 ORTHO05D002876 5.1e-10 69.3 268 28.7
MD01G1012800 Malus domestica HOM05D002539 ORTHO05D002876 6.6e-10 68.9 63 55.6
PGSC0003DMG400002773 Solanum tuberosum HOM05D002539 ORTHO05D002876 6.6e-10 68.9 286 28.0
Lsat_1_v5_gn_6_84020 Lactuca sativa HOM05D002539 ORTHO05D002876 8.6e-10 68.6 242 28.1
MBI18_g31675_MAGBIO Magnolia biondii HOM05D002539 ORTHO05D002876 8.6e-10 68.6 275 26.5
MSTRG.5140 Avicennia marina HOM05D002539 ORTHO05D002876 1.1e-09 68.2 268 28.0
EL10As5g23525 Beta vulgaris HOM05D002539 ORTHO05D002876 2.5e-09 67.0 293 27.0
Peaxi162Scf00916g00217 Petunia axillaris HOM05D002539 ORTHO05D002876 2.5e-09 67.0 297 27.3
SHI07194 Sapria himalayana HOM05D002539 ORTHO05D002876 2.5e-09 67.0 307 26.7
Solyc01g100430.3 Solanum lycopersicum HOM05D002539 ORTHO05D002876 2.5e-09 67.0 286 27.6
Sopen01g043950 Solanum pennellii HOM05D002539 ORTHO05D002876 2.5e-09 67.0 286 27.6
HanXRQChr13g0415261 Helianthus annuus HOM05D002539 ORTHO05D002876 3.3e-09 66.6 244 27.0
TAR374G1067 Trochodendron aralioides HOM05D002539 ORTHO05D002876 4.3e-09 66.2 250 28.0
Carub.0007s3306 Capsella rubella HOM05D002539 ORTHO05D002876 5.6e-09 65.9 237 27.0
DCAR_003645 Daucus carota HOM05D002539 ORTHO05D002876 9.6e-09 65.1 284 24.6
DCAR_025277 Daucus carota HOM05D002539 ORTHO05D002876 9.6e-09 65.1 284 24.6
HanXRQChr03g0083541 Helianthus annuus HOM05D002539 ORTHO05D002876 1.2e-08 64.7 281 27.4
AUR62011811 Chenopodium quinoa HOM05D002539 ORTHO05D002876 2.8e-08 63.5 292 26.4
ECA240G0639 Erigeron canadensis HOM05D002539 ORTHO05D002876 3.6e-08 63.2 265 26.0
Lj3C881T4 Lonicera japonica HOM05D002539 ORTHO05D002876 3.6e-08 63.2 69 52.2
unitig_37.g12524 Utricularia gibba HOM05D002539 ORTHO05D002876 3.6e-08 63.2 291 25.4
Lj5A335G22 Lonicera japonica HOM05D002539 ORTHO05D002876 4.7e-08 62.8 69 50.7
Hund04764 Selenicereus undatus HOM05D002539 ORTHO05D002876 4.7e-08 62.8 270 26.3
vmacro19740 Vaccinium macrocarpon HOM05D002539 ORTHO05D002876 6.2e-08 62.4 69 50.7
AUR62024659 Chenopodium quinoa HOM05D002539 ORTHO05D002876 8.1e-08 62.0 300 25.7
Lj3C881T5 Lonicera japonica HOM05D002539 ORTHO05D002876 1.1e-07 61.6 69 52.2
Peaxi162Scf00673g00327 Petunia axillaris HOM05D002539 ORTHO05D002876 1.1e-07 61.6 102 41.2
TAR374G1102 Trochodendron aralioides HOM05D002539 ORTHO05D012623 1.1e-07 61.6 46 71.7
ATR0618G264 Amborella trichopoda HOM05D002539 ORTHO05D002876 1.4e-07 61.2 74 50.0
CBR_g18976 Chara braunii HOM05D002539 ORTHO05D002876 1.4e-07 61.2 83 43.4
Sc17g0000470 Simmondsia chinensis HOM05D002539 ORTHO05D002876 1.4e-07 61.2 285 24.9
PGR119G2169 Punica granatum HOM05D002539 ORTHO05D002876 1.8e-07 60.8 246 27.6
Oeu039501.1 Olea europaea HOM05D002539 ORTHO05D002876 2.4e-07 60.5 278 27.0
SalBow6G4473 Salvia bowleyana HOM05D002539 ORTHO05D002876 4.0e-07 59.7 69 50.7
AUR62024655 Chenopodium quinoa HOM05D002539 ORTHO05D002876 5.2e-07 59.3 102 41.2
TPR.G1752 Trifolium pratense HOM05D002539 ORTHO05D002876 5.2e-07 59.3 80 47.5
Ah.02g112320 Amaranthus hybridus HOM05D002539 ORTHO05D002876 6.8e-07 58.9 271 25.8
Eucgr.H03223 Eucalyptus grandis HOM05D002539 ORTHO05D002876 6.8e-07 58.9 243 26.3
Atru.chr1.3420 Acer truncatum HOM05D002539 ORTHO05D002876 8.9e-07 58.5 108 38.9
Eucgr.K03428 Eucalyptus grandis HOM05D002539 ORTHO05D002876 8.9e-07 58.5 243 26.3
SalBow1G4930 Salvia bowleyana HOM05D002539 ORTHO05D002876 8.9e-07 58.5 82 46.3
Aqoxy1G01529 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 1.2e-06 58.2 102 41.2
AUR62011815 Chenopodium quinoa HOM05D002539 ORTHO05D002876 1.2e-06 58.2 243 26.7
Pp3c3_34840 Physcomitrium patens HOM05D002539 ORTHO05D002876 2.0e-06 57.4 90 42.2
CDE02G0620 Ceratophyllum demersum HOM05D002539 ORTHO05D002876 3.4e-06 56.6 60 53.3
Aqoxy1G00903 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 7.6e-06 55.5 96 41.7
Eucgr.G01361 Eucalyptus grandis HOM05D002539 ORTHO05D002876 9.9e-06 55.1 91 38.5
SEGI_09721 Sequoiadendron giganteum HOM05D002539 ORTHO05D002876 9.9e-06 55.1 287 25.1


User provided reference genes

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