Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 7.2e-217 756.9 371 100.0
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.4e-212 741.9 371 97.6
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.2e-205 718.8 371 94.3
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.4e-204 716.1 371 93.0
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 4.1e-204 714.5 371 94.6
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 2.4e-196 688.7 371 88.7
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 3.5e-195 684.9 371 90.3
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.7e-194 682.6 371 89.8
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 6.2e-192 674.1 372 89.0
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.1e-191 673.3 371 88.1
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 2.3e-191 672.2 371 88.1
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.9e-191 670.2 371 87.9
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 1.5e-190 669.5 371 87.6
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 2.6e-190 668.7 371 87.1
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 3.4e-190 668.3 378 87.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 5.8e-190 667.5 371 87.6
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.3e-189 666.4 371 87.3
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.3e-189 666.4 371 87.1
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 8.4e-189 663.7 371 86.8
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.1e-188 663.3 371 86.8
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.4e-188 662.9 371 86.5
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.4e-188 662.9 371 86.5
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.9e-188 662.5 371 86.5
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 3.2e-188 661.8 372 86.8
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 7.1e-188 660.6 371 86.0
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 9.2e-188 660.2 371 86.8
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 9.2e-188 660.2 371 86.8
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.5e-187 658.3 371 87.3
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.5e-187 658.3 371 85.2
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 7.8e-187 657.1 371 86.8
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.3e-186 656.4 371 85.7
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.9e-186 654.8 371 86.8
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.9e-186 654.8 371 86.8
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 6.6e-186 654.1 366 86.9
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 6.6e-186 654.1 371 86.3
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-185 653.3 371 86.0
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.1e-185 653.3 371 84.9
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.9e-185 652.5 372 84.7
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.5e-185 652.1 373 85.5
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.5e-185 652.1 371 85.7
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 2.5e-185 652.1 372 84.9
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 5.6e-185 651.0 371 86.0
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 1.2e-184 649.8 387 83.2
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-184 649.8 372 85.5
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-184 649.8 372 85.5
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.1e-184 649.0 372 85.2
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.8e-184 648.7 373 85.0
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 4.7e-184 647.9 372 84.9
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 4.7e-184 647.9 372 84.4
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 6.2e-184 647.5 371 84.9
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 8.1e-184 647.1 410 78.3
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 8.1e-184 647.1 372 84.9
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.1e-183 646.7 371 84.6
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.4e-183 646.4 372 85.2
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.8e-183 646.0 372 83.6
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.1e-183 645.2 365 86.6
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 3.1e-183 645.2 371 84.6
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.2e-182 643.3 374 82.9
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 2.6e-182 642.1 372 84.7
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.6e-182 642.1 374 82.9
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 5.8e-182 641.0 374 82.6
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 9.9e-182 640.2 371 83.6
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 9.9e-182 640.2 362 86.5
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.3e-181 639.8 385 82.3
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.2e-181 639.0 370 84.9
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 2.9e-181 638.6 372 84.4
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 3.8e-181 638.3 374 83.4
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 3.8e-181 638.3 371 84.6
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 3.8e-181 638.3 371 83.3
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 4.9e-181 637.9 371 83.6
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.1e-180 636.7 368 84.2
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.1e-180 636.7 371 83.6
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.9e-180 636.0 363 84.8
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.9e-180 636.0 373 84.5
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.9e-180 636.0 365 84.9
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.9e-180 636.0 371 86.5
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.2e-180 635.2 371 83.3
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.2e-180 635.2 372 81.5
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.4e-180 634.4 372 85.2
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 5.4e-180 634.4 365 84.7
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.1e-180 634.0 374 83.4
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 1.6e-179 632.9 374 83.4
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 2.7e-179 632.1 363 84.3
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 2.7e-179 632.1 363 84.3
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 2.7e-179 632.1 363 84.3
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 2.7e-179 632.1 363 84.3
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 2.7e-179 632.1 363 84.3
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 3.5e-179 631.7 365 83.6
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 7.8e-179 630.6 371 83.6
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.8e-179 630.6 398 79.6
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.3e-178 629.8 403 78.2
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.3e-178 629.0 360 84.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.0e-178 628.6 375 81.3
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 3.9e-178 628.2 371 82.7
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 8.7e-178 627.1 371 81.7
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 4.3e-177 624.8 371 81.9
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 7.3e-177 624.0 370 81.1
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 4.8e-176 621.3 357 84.3
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 8.1e-176 620.5 359 85.0
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.1e-175 620.2 372 81.5
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.2e-174 616.7 371 79.0
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.0e-174 615.9 371 81.7
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 7.6e-174 614.0 352 85.2
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.2e-173 612.5 351 84.6
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 9.3e-172 607.1 371 80.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.7e-171 605.5 373 82.0
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 2.7e-171 605.5 371 79.2
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.5e-171 605.1 371 82.7
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.3e-170 603.2 372 79.3
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.5e-169 599.7 371 79.0
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.6e-168 596.3 372 78.5
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.8e-168 595.5 369 80.2
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 5.3e-167 591.3 369 79.7
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 9.0e-167 590.5 369 79.7
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 2.6e-166 589.0 352 81.8
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 4.5e-166 588.2 370 78.1
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.5e-166 588.2 371 77.6
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 4.5e-166 588.2 371 79.0
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.2e-165 585.9 369 75.6
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 4.9e-165 584.7 361 79.2
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 6.4e-165 584.3 356 80.6
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-164 583.6 369 75.6
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 3.2e-164 582.0 373 77.7
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.2e-164 581.6 354 80.2
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 7.1e-164 580.9 434 69.4
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 1.3e-162 576.6 361 79.5
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.8e-162 576.2 372 75.8
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 3.9e-162 575.1 372 75.8
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 5.1e-162 574.7 352 81.0
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.4e-159 565.8 365 75.9
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.2e-158 563.5 368 75.3
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 3.4e-158 562.0 365 73.7
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.5e-158 561.6 372 74.5
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 8.4e-157 557.4 364 73.9
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 5.5e-156 554.7 281 98.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.9e-154 548.5 363 73.3
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.4e-151 540.0 371 69.5
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 4.1e-151 538.5 374 73.8
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.0e-149 533.9 397 70.8
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.2e-149 532.7 371 68.5
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 5.0e-149 531.6 281 92.5
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 3.2e-148 528.9 362 71.0
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 7.2e-148 527.7 372 68.5
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.8e-146 523.1 373 67.3
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.3e-146 522.7 376 67.0
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 2.8e-144 515.8 373 70.5
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 9.0e-143 510.8 371 66.3
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.0e-141 507.3 363 67.8
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.8e-136 489.2 326 75.2
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.8e-136 488.4 371 64.4
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 9.1e-135 484.2 289 81.0
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 5.9e-134 481.5 278 85.3
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.2e-133 479.6 365 69.9
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-132 477.2 359 66.6
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 5.5e-132 474.9 280 83.6
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.6e-131 473.4 284 80.6
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 5.7e-129 464.9 279 82.1
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.0e-125 454.1 328 70.1
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.1e-124 450.7 386 58.0
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.1e-119 434.1 276 78.6
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 7.7e-118 427.9 402 54.5
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.7e-118 427.9 367 56.1
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.7e-117 426.8 240 85.8
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 8.0e-115 417.9 273 72.9
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.4e-113 412.1 370 55.4
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 7.5e-113 411.4 286 71.0
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 5.9e-94 348.6 274 66.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 8.6e-93 344.7 199 84.4
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.6e-91 340.5 200 82.5
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 2.2e-88 330.1 177 88.7
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.7e-85 320.5 198 78.3
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 2.0e-73 280.4 172 80.8
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 2.6e-57 226.9 266 51.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.8e-51 206.1 373 33.2
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 2.3e-45 187.2 113 83.2
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.9e-45 186.4 452 29.2
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 2.9e-40 170.2 404 26.5
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 8.4e-40 168.7 119 67.2
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 4.2e-39 166.4 147 59.9
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 2.1e-38 164.1 119 65.5
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.6e-35 154.5 115 64.3
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 2.0e-33 147.5 303 30.4
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.9e-31 141.0 84 79.8
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 2.4e-10 70.9 49 75.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 2.9e-08 63.9 59 59.3


User provided reference genes

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